Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00849 ATGGGAGATAACAATGTGAACCTTCCACCGGGGTTTCGATTTTATCCAACAGATGAAGAGCTTGTGGTCCATTTTCTTCATAGAAAGGCAGCACTCTTACCTTGCCACCCTGATGTCATCCCTGATCTTGATCTCTATCCTTATGATCCTTGGGAACTTGATGGTAGAGCGTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGAACACAGAGTAGGGTGACTGAGAATGGATATTGGAAAGCAACGGGAATGGAAGAACCAGTGATGACAAGCTCAACTAACAAGAGAGTTGGCATCAAGAAATACTTTGTGTTTCATCTTGGTGAATCCCCTTCTGCTATCAAAACAAATTGGATAATGCAAGAATATTGCCTTTCCGATTATTCTGCTTCCTCTAGCAGATCCTCCAAAAGAAAATCAGATTATAGTAAATGGGTGATATGTCGTGTTTATGAGCGGAATGGAGATGATGATGATGGAACGGAGCTGTCTTGTTTGGATGAAGTTTTCTTGTCACTGGATGATCTTGATGAAATAAGCTTACCAAATTAA 558 0.414 MGDNNVNLPPGFRFYPTDEELVVHFLHRKAALLPCHPDVIPDLDLYPYDPWELDGRALAEGKQWYYYSRRTQSRVTENGYWKATGMEEPVMTSSTNKRVGIKKYFVFHLGESPSAIKTNWIMQEYCLSDYSASSSRSSKRKSDYSKWVICRVYERNGDDDDGTELSCLDEVFLSLDDLDEISLPN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00849 185 Gene3D NAC domain 17 159 IPR036093 GO:0003677|GO:0006355
Aip10g00849 185 ProSiteProfiles NAC domain profile. 8 155 IPR003441 GO:0003677|GO:0006355
Aip10g00849 185 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Aip10g00849 185 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 5 182 - -
Aip10g00849 185 PANTHER NAC TRANSCRIPTION FACTOR 56 5 182 - -
Aip10g00849 185 SUPERFAMILY NAC domain 5 154 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00849 Aip-Chr10 10330996 10331989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00849 1 170 NAC Transcription Factor Family AT1G61110 41.053 1.96e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g00849 NAM 4.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00849 - - gmx:100170712 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04621 03 130460850 130461784 Aip10g00849 10 10330996 10331989 PCT