Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00824 ATGGCTGGAACAGTGGATCTTATTGCTGATCTCAATGCTACCAAGCTTTCTTGGTCATTGGTTGTGGGGGTAGTTCGATTGTATGAGTTCCCGAGTCAGTGGAATGAAAACGAGGTGTTCAGCTTGGAGATGGTATTACAAGATGTGAAGGGTGATAGGATTCATGCAACCATCTCCAAACCTGCGTTGGAGGCATTCAGACACCAAATAAAGGAGCATGCTATTTACAAAATGCAGAATTTTATTGTTACAACTAATAATGGCAAATTTCGTCCTTTTGCTGAGCTTGAGTCAAATGGTGCCAGTGATGAAAATCTATTGTTTGATTACATAGGTGAGGTTGTGGGAAAGGAAGAGGCCAGGGGAATTATCACACGCACAGGTCACCAAAGCAAGCGTATTGCTCTGCAGTTGGAGGACCTAGACAAGAATAAAATTAAGTGTACATTGTTTGGAGAATTGGTTGACCAAGTGCTTCCACAACTTGAACGAGATGATGGGGAACCTTTCATATTGGTGGTCCAACTTTTTAAGACTAATGTCTATTTGAATTCACTGAATATTCAAAGTGCCTACTATGTCTCCAAAGTTTACTTTAATCTAAATCTGACTGAGATAAATGAGTTCAAGCAAAGGCATTGTTCCATTGAAGACTATAGAGGAGGTCCTCAATATGCAACAGAGGTGGGAAAAGATGATTGGTGTTACACTTCATGTAAGACATGCCCGAAGAAGGTTGTTGAAAGTAAAGATAGGTATTGGTGTGACCATTGTAGACGTGTAGGCTTCAAGGCTATGTTGAGGCTACAAATAATTGTTACTGATGGAACTGGGTGTCTAAAGCTCATTGTGTGGAACAAAGAAGCAGAGCAGATGGTGGGAAAGCTTGCTGACAAAGTTAACGAGATATGTATGTGGGAAAAGACTAACTCATACCCAAAATACTTGGATAATGTTATTGACAAAAGATTCTTATTCAAACTGAACATTACATACAAGAATATAAATGCCATTGAGGGGGTATACAGTGTAACCAAGCTTTCAGATGAGGACTTCCTCATATCGAGCTTCGGGTGTGCCAGCTCTTCTGTTGAAGCCTCTACTTCCCAAATAATGGGTCATACCTCTCTATCTGAGACACAAGATGATAGCAATGCCCACGGGGTAGTTTCTCTTTCGAAGGACTCTGCTGTGGAAATCAATGGTGATAGCTCTTATCAAACTCCAGCAAAGAGGTCATCCCCTGATACAGTTGATGGATACATAGGAGAAGCAATTGTCTCTGCAGATGCACAAGCATCGGCTAACAAGACCTTTAGGTG 1322 0.4115 MAGTVDLIADLNATKLSWSLVVGVVRLYEFPSQWNENEVFSLEMVLQDVKGDRIHATISKPALEAFRHQIKEHAIYKMQNFIVTTNNGKFRPFAELESNGASDENLLFDYIGEVVGKEEARGIITRTGHQSKRIALQLEDLDKNKIKCTLFGELVDQVLPQLERDDGEPFILVVQLFKTNVYLNSLNIQSAYYVSKVYFNLNLTEINEFKQRHCSIEDYRGGPQYATEVGKDDWCYTSCKTCPKKVVESKDRYWCDHCRRVGFKAMLRLQIIVTDGTGCLKLIVWNKEAEQMVGKLADKVNEICMWEKTNSYPKYLDNVIDKRFLFKLNITYKNINAIEGVYSVTKLSDEDFLISSFGCASSSVEASTSQIMGHTSLSETQDDSNAHGVVSLSKDSAVEINGDSSYQTPAKRSSPDTVDGYIGEAIVSADAQASANKTFR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00824 440 PANTHER BNAC01G35430D PROTEIN 7 91 - -
Aip10g00824 440 PANTHER BNAC01G35430D PROTEIN 232 374 - -
Aip10g00824 440 Pfam Replication factor-A C terminal domain 229 336 IPR013955 -
Aip10g00824 440 SUPERFAMILY Nucleic acid-binding proteins 228 352 IPR012340 -
Aip10g00824 440 CDD RPA1_DBD_A_like 19 92 - -
Aip10g00824 440 Gene3D - 226 356 IPR012340 -
Aip10g00824 440 Gene3D - 5 93 IPR012340 -
Aip10g00824 440 SUPERFAMILY Nucleic acid-binding proteins 7 93 IPR012340 -
Aip10g00824 440 SUPERFAMILY Nucleic acid-binding proteins 89 213 IPR012340 -
Aip10g00824 440 PANTHER REPLICATION FACTOR A 1, RFA1 7 91 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g00824 440 PANTHER REPLICATION FACTOR A 1, RFA1 232 374 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g00824 440 CDD RPA1_DBD_C 231 353 IPR013955 -
Aip10g00824 440 Pfam Domain of unknown function DUF223 43 91 IPR003871 -
Aip10g00824 440 CDD RPA1_DBD_B_like 109 212 - -
Aip10g00824 440 Gene3D - 94 215 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00824 Aip-Chr10 10094770 10097247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00824 236 337 Core DNA Replication Machinery Family AT5G08020 33.019 2.02e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00824 - - adu:107463979 587.415