Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00816 ATGTCTCACTTCGGAAGGTCAGGTCCACCAGACATTAGCGACACTTACTCCCTTCTCGTTCTCAACATCACCTTCCGTACAACCGCCGACGACCTCTTCCCTCTCTTCCACAAGTACGGCGACGTCGTCGACATTTTCATTCCCAAGGACCGCCGCACGGGCGACTCCAGGGGCTTCGCATTTGTTCGCTACAAGTATGCCGACGAGGCTCAAAAGGCTGTCGAGCGCCTCGACGGCAGGGTCGTCGACGGCCGCGAAATCACCGTCCAGTTCGCCAAGTACGGTCCCAACGCCGAGCGCATCCACAAAGGTAGGATTGTCGAATCTGCTCCCAGATCTAAGCGCAGCCGCAGTCCCAGGAGAAGGTATCGTGATGATGATTACAGAGAGAAGGATTATAGGAGGAGGAGTCGCAGCAGGAGTTACGATAGGTATGAGCGTGACAGGCACCGTGGCAGGGACAGGGATTATCGTCGCCGGAGCCGGAGTCGGAGTGCCAGTCCGGACAAGGGTCGTGGAAGGGGACGCTATGATGATGATGACCGCCCTATCCGTAGTATAAGCCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCGTAGATAGCCGCTCTCCTGCTAGGCGCAGCCCAAGTCCTCAAAGGAGTCCATCCCCTAGGACAAGTGCTTCCCCAAGGAAGAAGAGCCCTAGGGGTGAAAGCCCTAGGACTCGCAATGGACACTCCCCTACACCTGTCTCGCCACGTGGTCGTCCTGATGCTTCCCGTAGTCCATCACCTAGAAATTCTGATGGTGATGCATGA 798 0.5777 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFHKYGDVVDIFIPKDRRTGDSRGFAFVRYKYADEAQKAVERLDGRVVDGREITVQFAKYGPNAERIHKGRIVESAPRSKRSRSPRRRYRDDDYREKDYRRRSRSRSYDRYERDRHRGRDRDYRRRSRSRSASPDKGRGRGRYDDDDRPIRSISRSRSRSRSRSVDSRSPARRSPSPQRSPSPRTSASPRKKSPRGESPRTRNGHSPTPVSPRGRPDASRSPSPRNSDGDA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00816 265 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 264 - -
Aip10g00816 265 SMART rrm1_1 17 90 IPR000504 GO:0003723
Aip10g00816 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Aip10g00816 265 SMART rrm2_1 17 90 IPR003954 GO:0003676
Aip10g00816 265 MobiDBLite consensus disorder prediction 102 265 - -
Aip10g00816 265 Gene3D - 4 103 IPR012677 -
Aip10g00816 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Aip10g00816 265 MobiDBLite consensus disorder prediction 102 202 - -
Aip10g00816 265 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 264 - -
Aip10g00816 265 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
Aip10g00816 265 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00816 Aip-Chr10 9960753 9963624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00816 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 36.250 9.48e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00816 K12891 - gmx:100778928 255.373