Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00808 ATGTCTTCTGCACATATAATAAGGTTGTGCTATATATTCTTCATTGGAAATTTGGCAATCATTATCAAGATTTTGCCCCTCTCATTAGTTATTTCTATGGCATTGAATGGAGATGCATATGGACTCATGTTTTGTTTTTCCTCCTTTTCCATATTCAATTTGAATTCAAAAAGGTTGTGTTTATTTAGAATAGATGTCATTGGCCTTTTAACTTCAGTGAGGAAAGAGAAAGAATATGCAAAAGAGGAAAAAATTGTGAAAATGATTGTGCTTGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCTTCTGGCTATGTGGAGCAGCCTGTTGTGGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATATATGCCACTCAAATATTATTTAATCTTGATTTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCAACCACTGTTTATTGCAAATGAAGGTAAAATTGTCTCCTTGGAAGATGATTTCATGCATTTAACTAGAAAATGTACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGTACATAATTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTTTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTATTTACCGAGGAGCCTGATTTACACAAATCTGTTCCCTGTGGAGAAGGGGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGCTGGTGAGTCTTCTGGAATTTTATCTAAATCCCCAGTTCTTATAAATTTTCTGGCTGGAAAACAGCCTGCTGTTTCCGGAGAGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGAAAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACATTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGCAGATGGGCATGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1374 0.369 MSSAHIIRLCYIFFIGNLAIIIKILPLSLVISMALNGDAYGLMFCFSSFSIFNLNSKRLCLFRIDVIGLLTSVRKEKEYAKEEKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVIYATQILFNLDFPEVVEFRQSMIEQGVNGTQPLFIANEGKIVSLEDDFMHLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKYIINVTPRFKIKITVEDHSGEGIFLFFDREASYLLKKSCADLFTEEPDLHKSVPCGEGDIGIKKESSKTFIKSEKVAGESSGILSKSPVLINFLAGKQPAVSGETEFASLINGEHGKDEKTPSNDTVSDDLSAELDILLSSPEKETQEVLSHIIDAPSQYGEKLIHENHVVTSKGKRNLNPQFEEAAADADGHGFKIAKVNGV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00808 457 Gene3D - 43 176 IPR012340 -
Aip10g00808 457 PANTHER REPLICATION FACTOR A 1, RFA1 49 297 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip10g00808 457 Gene3D - 191 322 IPR012340 -
Aip10g00808 457 SUPERFAMILY Nucleic acid-binding proteins 199 298 IPR012340 -
Aip10g00808 457 CDD RPA1_DBD_C 202 302 IPR013955 -
Aip10g00808 457 CDD RPA1_DBD_B_like 65 168 - -
Aip10g00808 457 SUPERFAMILY Nucleic acid-binding proteins 63 167 IPR012340 -
Aip10g00808 457 Pfam Replication factor-A C terminal domain 216 297 IPR013955 -
Aip10g00808 457 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 49 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00808 Aip-Chr10 9857686 9861167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00808 64 296 Core DNA Replication Machinery Family AT5G08020 24.900 1.57e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00808 - - adu:110280586 685.256