Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00800 ATGGCCACCGCCACTGCAGCTACCTCGCAGCTGCCGGCGCCGCCACCGCAGCAGCAATTTCTCAACTTAGAATCCCTGGCTCGGATAGACACTACAACTCTCTCACAGTCGGAGCTCCATGCCCTGTCTCTCTCCTCCCTCTCCGCCTTCGATCTCCACTCCACTCGTCGCCACCTCGTTACTCCCAAAATCGATCCGTCTCTCTTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCGCCGCCCCGAGTCCTCTCCCACCGGCCGCCGACGCCGTGTTGCCGGCCTCCTCCCCGCCGCTAAGCTACCTTCTCTCCCTTCCGATGACCTTGGAAATGCCGAGAACCGTGTAATAATCGATTATCTGAAACAGTTTATCAGGGAAGATCCCAAATTCGACCAAGTCGTGTTCGCTCCGCCTTCATCCGCTTCCGCGCTGGTCGCCTACCACGGAGGTGGTGCTGGCGAAGGGAGAGGAGAGCTCGCTATGGTGAAATTCGGAGAGAGGAAAAGGAAGAGAGGGCGGAAGCCGAAGGTGAAGGTGAACTTGGAGGAATCCTACAGCGGGATGGAGATTGTGAACAAGAACGGAGTGGTGATCAATCTGATGGATCTAGCGAAGGCGGAGGATCCTTTTGCGGAGGAGCTGAGGAGGCGGACTGACGGACTGCAGGGAGAGGAGGAGCTGTTAGGGTTTCTGAGGGATTTAGAGGGACAGTGGGGAAGCAGGAGGAGGAAGAGGAGGATTGTGGACGCTGCCAATTTCGGTGACGCATTGCCGCTTGGTTGGAAGCTTATTCTCGGGTTGAAGAGAAAGGATGGTCGCGCATGGATCTATTGTCGCAGATACATAAGCCCTAGTGGACAGCAATTTATGTCTTGTAGAGAAGTTGCTTCCTATTTGCAGTCTCTTATTGGCCATAGTGATGCACCGTTGCAAATCGGTCATAGGAGTGAGAATTTGCCGCAGGAACAAAGAGCAATCACTGAACACTCTGCAGGTGTTGCCCATGAGGATCAACGTGAATGGCAGATTGTTGTAGCTAACTCAGATGTACCTAGTTTTTCTGTTTCTAATGAACGTGGGATGGAATTGGCCTTGTTGGGTTTGGAAAATCTTGCAGACGTGGAAATACATGACCTATTTGAATGTCACAAATGCAATGTGACCTTTGACGAGAAGGATTCATACTTGCAGCACTTATTGTCATTTCACCAGAGAACAACAAGACGATATCGGCTTGGATCTTCTCTTGGAGATGGAGTTATAATTAAAGATGGAAAGTTTGAGTGCCAGTTCTGTCACAAGGTGTTTTCAGAAAGGCGTCGCTACAGTTCTCATGTGGGGATCCATGTTAGGAGTAATGTGAGGCAGGCTGAAGATTCGTCAGGTCTGGAAAATGTTCAACGGACAGACAAGTCTCCTGTGAGGGAGGACATGCTGCTTTCAAGAATCTCCAGGATGGATGCCCTTATTGAAATTGCTCAGAGCTCTATCATGGAGGATTGTGACATGGAGCCTGCTTCGAAAGTTGCTGCTTGTAGCTTGGATCAAGATATAAACTTTGAGTCAGAACAGCAAATGGAAGATAGCTTAAATGGAACAAATGTTGTTCAAGTTTTAAATCAGCAGGATAGTCCAGAGTTACACATGGATGTGGAAGAAGAGGAAACTGATGATGATAGCCAAGTTATTGATGCAAAGATGGTTACTTGTCTAGATCACACGGGTTTGTTATGTGTAAATGAGAAAAATGGTAATCCATCTGTTGAAGTGTTTGATAAGTCTGGGATTGATATGGGAGGAGCTTCTCAAGACCCTTTGCTTATTTTATCTTGCAAGGACAAAATATCAGATTCTGGGGAGAATGAAAATTTTTGTTGCTCTAATATCAAAGAAAAGTTTAAGTTTAATGAAGATAACAATAATAAGAATGAATTGGAAATTGGTTCAGATGGTTGCAAGGATGTTCCTGTTAGGACCAATGTTCAAGAGATGCTAATGCCAGCTTCTGAAGAAAATGTGATCGACTCTAGGGTTTCTAAATCTCCTATATCCCAAATGCAATCTTTGTATTGCTCTCCTGCTTTCAGCTCTGATAAGGTATAA 2151 0.4542 MATATAATSQLPAPPPQQQFLNLESLARIDTTTLSQSELHALSLSSLSAFDLHSTRRHLVTPKIDPSLFXXXXXXXXXXXXXXXXXXXXXXXPRRPESSPTGRRRRVAGLLPAAKLPSLPSDDLGNAENRVIIDYLKQFIREDPKFDQVVFAPPSSASALVAYHGGGAGEGRGELAMVKFGERKRKRGRKPKVKVNLEESYSGMEIVNKNGVVINLMDLAKAEDPFAEELRRRTDGLQGEEELLGFLRDLEGQWGSRRRKRRIVDAANFGDALPLGWKLILGLKRKDGRAWIYCRRYISPSGQQFMSCREVASYLQSLIGHSDAPLQIGHRSENLPQEQRAITEHSAGVAHEDQREWQIVVANSDVPSFSVSNERGMELALLGLENLADVEIHDLFECHKCNVTFDEKDSYLQHLLSFHQRTTRRYRLGSSLGDGVIIKDGKFECQFCHKVFSERRRYSSHVGIHVRSNVRQAEDSSGLENVQRTDKSPVREDMLLSRISRMDALIEIAQSSIMEDCDMEPASKVAACSLDQDINFESEQQMEDSLNGTNVVQVLNQQDSPELHMDVEEEETDDDSQVIDAKMVTCLDHTGLLCVNEKNGNPSVEVFDKSGIDMGGASQDPLLILSCKDKISDSGENENFCCSNIKEKFKFNEDNNNKNELEIGSDGCKDVPVRTNVQEMLMPASEENVIDSRVSKSPISQMQSLYCSPAFSSDKV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00800 716 Gene3D Classic Zinc Finger 385 473 - -
Aip10g00800 716 SMART c2h2final6 396 419 IPR013087 -
Aip10g00800 716 SMART c2h2final6 443 465 IPR013087 -
Aip10g00800 716 SUPERFAMILY DNA-binding domain 271 323 IPR016177 GO:0003677
Aip10g00800 716 MobiDBLite consensus disorder prediction 85 108 - -
Aip10g00800 716 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 19 714 IPR037472 -
Aip10g00800 716 ProSiteProfiles Zinc finger C2H2 type domain profile. 443 470 IPR013087 -
Aip10g00800 716 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 19 714 - -
Aip10g00800 716 Gene3D - 251 356 - -
Aip10g00800 716 ProSiteProfiles Zinc finger C2H2 type domain profile. 396 424 IPR013087 -
Aip10g00800 716 ProSitePatterns Zinc finger C2H2 type domain signature. 445 465 IPR013087 -
Aip10g00800 716 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 263 335 IPR001739 GO:0003677
Aip10g00800 716 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00800 Aip-Chr10 9713039 9716897 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip10g00800 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00800 - - adu:107468625 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00800 10 9713039 9716897 Aip10g00800 10 9713039 9716897 ECH