Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00782 ATGGTGTTTCACCATCGCAGAAAACTCATGCCAGAATTCTGCGAGTCCTTCTGCCACGTGGAGCAGAATTGTTCTTCAAACTGTGATGAGTGCCTCAAAATCTGCATCACCAACCCCCAATACTACTATTATTCCCAACCACCGCCACCGATTCCTCCTCTCCCCTTAGACGATACATCAGACCATGGAAAAAGCCACGCGCTGTCGCCCTACTTGGTCCTTGCTCTCTCCGTTATCGGAGCTGCTTTCTTCGTTGTTATTTGCTGTGCAATCTTCGCGAGGATCTTCAGAAGGAGGAGAAGATCCTTATCGCCACCGTTGAGTCTTCGAACACAGGATAATACGCGTGATGATTTCTTCGTTGATGAGGAGCACGGTCCTGTGGTGGACCACCCGATCTGGTACATCCGTACACCCGGTCTTCAAGAATCGATCATCAACGCAATCGCTGTTTGTAGGTATAAGAGAGGTGAGGGTTTGATTGAAGGAACAGAGTGCTCTGTTTGTTTGAGCGAGTTTCAAGAAGATGAGAATGTTAGATTATTGCCAAAGTGTAACCACGCTTTTCATTTGCCTTGTATTGATACATGGCTTAGGTCACACACCAATTGTCCTATGTGTAGAGCTCCAATTGTTTCCAAGAACACTCTTAGGGTTCCATCTATGCAGCATCATAATCATAATCTTAATGTTCTTGATTCAACTTCAAGTTCAAGTTCAAGTTCAGGTTCAGGTTCAGGTTCCTTGGAGATGAGATCTGTGGAAAATATTAACAATGGAAGAAGCCTTAGAGGAATGGAAAATACTCAAAATATTGGCTTTGAATTGAGGAACAGGGAAGAGGATGAAGAAGGAGAAGAACAAGGCCAATTGGGAGGTGAAAGAGTACTAAGCATGATTAGGCCAAGGAGATCTGTTTCTCTGGATTCTTCTTCTGTTGCAGATATTGCTCTTGCTGCATCTGCATTTGTTCTATCTGCGGATTCGGATTCCGATTCGAATAGAGTTATTGGGGATGAGACTGAGAGTGAACGAATTGGTTCAAAGAGGGTTAATGTTAATGGAAATGAGAATGAGAATGGGGCAAGTAGTTCAAAAGGGAGAGGAGGAGGGAGAGGGAGAAGCTCTTCTTTCAGGATAAGGTATCTGCATAGTGTTGTTCCTAGTTCAATGAAGAGGTCACGTTCCTACAATGGTAAATACCTTGTGTCTTCTTTGTATAGCCGCAGCCAAACTCAGAGGAAGCAAAATGCTAATAATCTGAGAAGCTTTTAA 1275 0.4369 MVFHHRRKLMPEFCESFCHVEQNCSSNCDECLKICITNPQYYYYSQPPPPIPPLPLDDTSDHGKSHALSPYLVLALSVIGAAFFVVICCAIFARIFRRRRRSLSPPLSLRTQDNTRDDFFVDEEHGPVVDHPIWYIRTPGLQESIINAIAVCRYKRGEGLIEGTECSVCLSEFQEDENVRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVSKNTLRVPSMQHHNHNLNVLDSTSSSSSSSGSGSGSLEMRSVENINNGRSLRGMENTQNIGFELRNREEDEEGEEQGQLGGERVLSMIRPRRSVSLDSSSVADIALAASAFVLSADSDSDSNRVIGDETESERIGSKRVNVNGNENENGASSSKGRGGGRGRSSSFRIRYLHSVVPSSMKRSRSYNGKYLVSSLYSRSQTQRKQNANNLRSF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00782 424 SMART ring_2 166 207 IPR001841 -
Aip10g00782 424 MobiDBLite consensus disorder prediction 228 251 - -
Aip10g00782 424 MobiDBLite consensus disorder prediction 348 371 - -
Aip10g00782 424 SMART FANCL_C_2 162 215 - -
Aip10g00782 424 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 411 IPR044675 -
Aip10g00782 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 217 IPR013083 -
Aip10g00782 424 SUPERFAMILY RING/U-box 160 214 - -
Aip10g00782 424 MobiDBLite consensus disorder prediction 276 295 - -
Aip10g00782 424 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 411 - -
Aip10g00782 424 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Aip10g00782 424 MobiDBLite consensus disorder prediction 329 376 - -
Aip10g00782 424 Pfam Ring finger domain 165 208 IPR001841 -
Aip10g00782 424 MobiDBLite consensus disorder prediction 333 347 - -
Aip10g00782 424 CDD RING-H2_PA-TM-RING 165 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00782 Aip-Chr10 9540975 9542566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00782 54 212 C3H Transcription Factor Family AT1G72220 48.447 4.27e-44 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00782 - - adu:107468728 680.633