Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00771 ATGTTCATCTCCGATCCTTCTCTCGGAAGAAGCAGCCGCTACTCCTTCTCTCAGATCTGGCTCACGGGATCGGAGTCTCACTTTACTAACTTCTGCAAGGTAAACGAAGAAGAAAGTTATACCGACTTCAACCATATTTGGTGTATCTCAAGAAATATGACGAAACATAAGATAGAAATAAAGAAGATAGAGAACATAGCAGCAAGGCAGGTGGCTTTTTCAAAGAGGAGAAGAAGTCTGTTCAAGAAGGCCGGGGAGCTTTCAACTCTCTGTGATGCAGAGGTGGCGCTCCTTGTCTTTTCTGCTACTGGCAAACTCTTCCAACACTCTAGTTCAAGTGTGGAACAGGTAGTAGAAATGCACAAAAATATGCATTCAAGCATCGACAAATCATCATATCACCCTCCAATGGAATTGCAAATGCGCAATGAGGTGGCAGATAAGACTCATGAATTAAGACAGTTAAATGGAGAAGAGCTTCAAGAATTAAAATTTCAAGAACTAATAATACAAAAATATTTTTAA 525 0.4019 MFISDPSLGRSSRYSFSQIWLTGSESHFTNFCKVNEEESYTDFNHIWCISRNMTKHKIEIKKIENIAARQVAFSKRRRSLFKKAGELSTLCDAEVALLVFSATGKLFQHSSSSVEQVVEMHKNMHSSIDKSSYHPPMELQMRNEVADKTHELRQLNGEELQELKFQELIIQKYF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00771 174 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 53 168 - -
Aip10g00771 174 PRINTS MADS domain signature 55 75 IPR002100 GO:0003677|GO:0046983
Aip10g00771 174 PRINTS MADS domain signature 75 90 IPR002100 GO:0003677|GO:0046983
Aip10g00771 174 PRINTS MADS domain signature 90 111 IPR002100 GO:0003677|GO:0046983
Aip10g00771 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 53 168 - -
Aip10g00771 174 ProSiteProfiles MADS-box domain profile. 53 113 IPR002100 GO:0003677|GO:0046983
Aip10g00771 174 SUPERFAMILY SRF-like 55 128 IPR036879 GO:0003677|GO:0046983
Aip10g00771 174 SMART madsneu2 53 112 IPR002100 GO:0003677|GO:0046983
Aip10g00771 174 CDD MADS_MEF2_like 57 127 IPR033896 GO:0000977|GO:0045944
Aip10g00771 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 62 108 IPR002100 GO:0003677|GO:0046983
Aip10g00771 174 Gene3D - 65 133 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00771 Aip-Chr10 9423878 9437171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00771 53 168 MADS-box Gene Family AT2G22540 54.400 4.45e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip10g00771 SRF-TF 6.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00771 - - ahf:112784740 215.312