Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00770 ATGTCAAAACAGAAGATGGAAATAAAGAAGATAGAGAAGAATGCATCAAGGCAAGCAACCTTTAGTAAGAGGAAGAGAGGGATTTTCAAGAAGGCTAAGGAGCTTTCAACTCTTTGTGATGCTGACTTGGCTCTCATTGTCTTTTCTCCTTCCGGCAAGCTCTTCGATTTCGCTTCCTCAAGGACGGAGTTGAGAAATGAATGCCTTTTGATGAGTTCAGACGAATCTTCAAACCGGAATCTGATACAAATACAAATAGTACTTGAGAAGGACACCTACTACCTGAAGTGCAAGGAACTAACAGATAAGACTATTGGACTCAGGCACTTGAATGGAGAGGAGCTGCAAGGAATGAAAATTCATGAACTACAGAAACTAGAGAAAGTGTTAGGAAAGGGTTTGGCTCGTGTTTCAAAAGAAAAGGATGAAAGAAATCTAAAAGATATTATTGAGATGAAGAAAAGGGGACTTCAAATGGTGCAAGACAACCATAGACTGAAACAGATGAGAAGTCAAACAAACAGTCAAGGGCAATCATCAAAGTCAAACTCTGCTGAAGAGTCAGATAATCGTGATCATGGTGCTCCTAATCTCAACTTGGGGCTTCCGATGTTCAAATGA 621 0.401 MSKQKMEIKKIEKNASRQATFSKRKRGIFKKAKELSTLCDADLALIVFSPSGKLFDFASSRTELRNECLLMSSDESSNRNLIQIQIVLEKDTYYLKCKELTDKTIGLRHLNGEELQGMKIHELQKLEKVLGKGLARVSKEKDERNLKDIIEMKKRGLQMVQDNHRLKQMRSQTNSQGQSSKSNSAEESDNRDHGAPNLNLGLPMFK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00770 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip10g00770 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip10g00770 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip10g00770 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip10g00770 206 Gene3D - 14 83 IPR036879 GO:0003677|GO:0046983
Aip10g00770 206 SUPERFAMILY SRF-like 3 63 IPR036879 GO:0003677|GO:0046983
Aip10g00770 206 Pfam K-box region 104 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip10g00770 206 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 188 - -
Aip10g00770 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 - -
Aip10g00770 206 MobiDBLite consensus disorder prediction 167 206 - -
Aip10g00770 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip10g00770 206 MobiDBLite consensus disorder prediction 167 184 - -
Aip10g00770 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00770 Aip-Chr10 9383932 9390009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00770 1 172 MADS-box Gene Family AT2G22540 45.402 2.28e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip10g00770 K-box 8.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00770 - - ahf:112786765 339.732