Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00751 ATGTCCGCACAATGGAGTGGTAAGGCCGATCCAGCGAGGGTTCCCAGTCTAATCCATCGCCAGAGTGGACCGGAACTGGCTTCAAAGGAGAATGTGGGGTGTTGTGAAGTGTGTCTGATTCTGATTTTGAAAAATACAAAGTCGGGGTGGCAAATGGCATTGGGTGCTGCAAAGGAATCTTATCCCCAAAGGCCTGGTGAGGCTGATTGTATCTACTATTTGAGGACTGGATTTTGTGGCTATGGTTCCTGCTACCGTTTCAACCATTTTCGTGATCGGACCGAAGTTGTTGGTGTTGTTGCTAGGACTGGAGGAGGGGAGTACTCGGAGCGAATTGGCCAGCCTTTGTGCCAGTATTACATGAAGATAGGGTCATGTAAATTTGGTTCTTCCTTCAAGTACAACCATCCTAGGCAGGTTGGAGACTCTGCTACCCCTGTGTCACTAAATTATAAACATGGAGGAGATGAGTCTTATATCTCCGTATAA 489 0.4724 MSAQWSGKADPARVPSLIHRQSGPELASKENVGCCEVCLILILKNTKSGWQMALGAAKESYPQRPGEADCIYYLRTGFCGYGSCYRFNHFRDRTEVVGVVARTGGGEYSERIGQPLCQYYMKIGSCKFGSSFKYNHPRQVGDSATPVSLNYKHGGDESYISV 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00751 162 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 137 IPR000571 GO:0046872
Aip10g00751 162 PANTHER PROTEIN PHOSPHATASE RELATED 49 151 - -
Aip10g00751 162 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 49 151 - -
Aip10g00751 162 SMART c3hfinal6 64 91 IPR000571 GO:0046872
Aip10g00751 162 SMART c3hfinal6 111 138 IPR000571 GO:0046872
Aip10g00751 162 ProSiteProfiles Zinc finger C3H1-type profile. 111 139 IPR000571 GO:0046872
Aip10g00751 162 Gene3D - 61 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00751 Aip-Chr10 9109252 9110366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00751 108 155 C2H2 Transcription Factor Family AT5G18550 39.583 2.90e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip10g00751 zf-CCCH 4.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00751 - - qsu:112020617 159.073