Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00744 ATGGTTCACTTCTTCTGGCCCCGCGCCACGTGGCACTTCAACCACCTTGACCTGAACGCTGAAGACGACACCACCTCCGGCGCCGGCGGGGGAATCAACTTCGAGGCGTACGAATCTGTACCGGTGGAGGTTAGCGGCGACGAAGTTCCCCTGCCGGTGGAATCGTTCGTGGAAACCGATTTCCACCAAGTGCTGAAGACGAACATCGAGCGGTGCAAGTACGTGAAGCCTACGCCGATTCAGCGCCACGCCATTCCCATTGCTTGCGCCGGCCGTGACTTGATGGCCTGCGCGCAGACTGGGTCCGGTAAAACGGCGGCGTTTTGCTTCCCGATCATTTCTGTTATTCTTAAGAATCGTCGTCCGGGGTTTACTTCTGTGGTTCGTGATCGTGGCGGCACTGTTTCATATCCAACGTCACTTATTCTTTCTCCTACTAGAGAATTATCTTGCCAAATACATGATGAAGCGAAGAAGTTTGCTCATCAAACTGGAGTGAAGGTTGTTGTTGCTTATGGTGGAGCTGCAATAACTCAGCAGCTGCGGAATTTAGAGAAGGGTGTTGATATACTTGTTGCTACTCCTGGGAGGTTGGTGGATATCATTGAAAGAGGGAGGGTTTCTTTGACAAGGATAAAGCTTCTTGCTTTGGATGAGGCTGATCGAATGTTGGACATGGGGTTTGAGCAGCAGATACGCAAGATTGTTGAGCAGATGGACATGCCTCCACCTGGTGTTAGGCAAACTATGCTTTTCAGCGCTACATTCCCTGATGATATTCAGAAGCTTGCATCTGACTTTCTATCAAACTACATATTCCTATCTGTTGGAAGGGTTGGTTCTAGCACTGAATTGATTGTGCAGAAAGTTGAATATGTTGAGGATAATGAAAAGATTAACCATCTAATGGATCTACTCCATGGTCAAAATGCACGTGGCGCCAACGGGAAGCCTGCTTTGACTCTTGTATTTGTTGAAACAAAGAGGGGAGCGGATAATTTAGAATCTACCTTGACGAGAAAAGGGTTTCGTGCTATTGCAATACATGGTGACAAAGTTCAAATGGAAAGGGAACGAGCTTTAAGATCCTTCAAAAAAGGTGCGACTCCTATCATGGTGGCGACAGATGTTGCTTCCAGAGGTTTGGATATCCCGCATGTGGCCCATGTCATCAATTATGATTTGCCAAGAAACATTGATGACTATGTTCACAGAATTGGCAGAACTGGCCGTGCTGGCAAATCTGGTTTTGCCACTGCCTTCTTCAGCTACAAGAACAATCATCTTGCAAAGCCTCTTGTTGACCTTTTGCAGGAAGCAAAGCAAGAAATTCCTTCTTGGCTGAGCCAATATGCTGGTGAGTCTTCATCATATGATGGCACTGGTGGTAGCCATCCATCTCAGCAGTATGGTGGTCGTGACTTCCGAAATGTTACTGAACCTGAAGTGGAGAATTATGACAACCACTCCACTACTTTTGGCGATTCATATAATGCTGATTATACATTTGACATAAAAGACTCCAATGAATATGCTGATTCATCATCTTATGAGATGGCAAATTCAGTTCCTCCTGCTACCAGTTGTCATTATACTTATGCCAATACTGACTTGTATGGAGGTGGCAACGTTGAAGATGGTCCTGGAGGTTATGCATCGATTGTTGCAACTGGATGGGACTAG 1683 0.4641 MVHFFWPRATWHFNHLDLNAEDDTTSGAGGGINFEAYESVPVEVSGDEVPLPVESFVETDFHQVLKTNIERCKYVKPTPIQRHAIPIACAGRDLMACAQTGSGKTAAFCFPIISVILKNRRPGFTSVVRDRGGTVSYPTSLILSPTRELSCQIHDEAKKFAHQTGVKVVVAYGGAAITQQLRNLEKGVDILVATPGRLVDIIERGRVSLTRIKLLALDEADRMLDMGFEQQIRKIVEQMDMPPPGVRQTMLFSATFPDDIQKLASDFLSNYIFLSVGRVGSSTELIVQKVEYVEDNEKINHLMDLLHGQNARGANGKPALTLVFVETKRGADNLESTLTRKGFRAIAIHGDKVQMERERALRSFKKGATPIMVATDVASRGLDIPHVAHVINYDLPRNIDDYVHRIGRTGRAGKSGFATAFFSYKNNHLAKPLVDLLQEAKQEIPSWLSQYAGESSSYDGTGGSHPSQQYGGRDFRNVTEPEVENYDNHSTTFGDSYNADYTFDIKDSNEYADSSSYEMANSVPPATSCHYTYANTDLYGGGNVEDGPGGYASIVATGWD 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00744 560 Gene3D - 276 456 IPR027417 -
Aip10g00744 560 SMART ultradead3 73 289 IPR014001 -
Aip10g00744 560 SMART helicmild6 332 413 IPR001650 -
Aip10g00744 560 Pfam DEAD/DEAH box helicase 78 263 IPR011545 GO:0003676|GO:0005524
Aip10g00744 560 Gene3D - 14 275 IPR027417 -
Aip10g00744 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 428 IPR027417 -
Aip10g00744 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 274 IPR014001 -
Aip10g00744 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 452 IPR001650 -
Aip10g00744 560 CDD DEADc_DDX3_DDX4 55 280 IPR044763 GO:0003724|GO:0005524
Aip10g00744 560 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 25 488 - -
Aip10g00744 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Aip10g00744 560 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 25 488 - -
Aip10g00744 560 Pfam Helicase conserved C-terminal domain 297 413 IPR001650 -
Aip10g00744 560 CDD SF2_C_DEAD 286 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00744 Aip-Chr10 8952066 8955260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00744 52 445 Eukaryotic Initiation Factors Gene Family AT3G19760 31.899 2.77e-59 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00744 K11594 - gmx:100791226 717.998