Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip10g00708 | ATGTGCAAAGGGACCCAACAATTTGTCCACCGTTCATGTCTTGATCACTGGCGCTCGGTAAAGGAAGGATTTGCCTTCTCTCACTGCACTACTTGCAAAGCCCAATATCATCTCAGGGTTGAATTGTTTGAGGACAATTCTTGGCGTAAAGCAAAGTTTAGACTCTTTGTTGCAAGAGATGTTTTCCTTGTTTTTCTGGCTGTACAGACCGTAATTGCGGGTATAGGTGGCTTTGCATACATCATGGACAAGGATGGGAACTTCAGGAACTCTTTTGATGATGGTTGGGATAGGATACTGTCAAAACATCCTATACCATTCTATTATTGTATTGGAGTGCTGGCTTTCTTTGTACTGATCGGGTTTTTCGGTCTCATACTGCATTGCACCTCCCTCAACAGCAATGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCCTTGATTGCTTTCCTGCATCAATGGAGGCTTGCTTTGCCCTTGTTGTGGTTTTCGTAGTCATCTTTGCTATTCTCGGCATTGCTTATGGTTTCCTTGCAGCCACCATGGCAATCCAAAGAATTTGGCAAAGGCACTACCATATTCTCACCAAAAGGGAGCTTACAAAGGAATACGTAGTAGAGGATCTATGTGGGACCTATGTCCCACCAAAGTTGGATCCAGAACATGAAGCTCGCTTGAAAATGCTCAAGCTTTTGTAA | 714 | 0.4398 | MCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQYHLRVELFEDNSWRKAKFRLFVARDVFLVFLAVQTVIAGIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCTSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLCGTYVPPKLDPEHEARLKMLKLL | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip10g00708 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 47 | IPR013083 | - | |
| Aip10g00708 | 237 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 237 | - | - | |
| Aip10g00708 | 237 | SUPERFAMILY | RING/U-box | 2 | 37 | - | - | |
| Aip10g00708 | 237 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 1 | 39 | IPR011016 | GO:0008270 | |
| Aip10g00708 | 237 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 237 | - | - | |
| Aip10g00708 | 237 | SMART | ringv_2 | 1 | 33 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip10g00708 | Aip-Chr10 | 8190512 | 8194251 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip10g00708 | 1 | 237 | C3H Transcription Factor Family | AT1G11020 | 88.285 | 1.45e-149 | 417 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip10g00708 | - | - | gmx:100818950 | 466.848 |