Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00689 ATGGCATCACCATCGGAACTAAGCCTTGATTGCAAGCCACACAGCTACTCCATGTTGCTGAAATCCTTTGGAGATCATAATAATAGTAACAGTAATGATCAAGAGCAGAATCAGAGCTACAAGATTGAGGAGTTCCTCTCCCGTCTTGAGGAAGAACGTCTCAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTACTCACCAACGCTATGGAGGCGTCAAGGCAGCAACTGCAGGCCTTCAACCAAGGAACAACAAGGCCGGTGCTGGAAGAATTCATTCCCATAAAGCACTCGGAAATCTCCGAGAAGGAGGCGCCGTCTTCCATGAACATGATGATGAGTGATAACAAGGCTAATTGGATGACATCTGCTCAACTATGGAGCCAATCAAGCCAAGAAGGAACGACAAGCGCTGCCACTCCTCCTCCTTCAAAAGATGCTGATAATAACAATAATATTGGATTCATGAGCATGAGCCCCAACAAGCACAGGAACGGGGGCAGTGGAGGAGCCTTCCTGCCGTTCTCCAAGGAACGGAGGAACAACAACTCTTGTACATTGGGAGGTGAGCTGGCACTTGCTTCCCCTGACAAGGAAATGCTCATCATGGATGATGATAATAATAATAATAATAAGAGAGACCATTCCTCATCAAATGATCAGGGAAAAGGAACTACTACTAGTAGTGCTACTCCACCTCCATCTACCACCACCACCTCTCAAACACACAGGAAAGCAAGAAGGTGCTGGTCACCCGACCTGCACCGTAGATTTGTTAATGCTCTTCAAATGCTAGGCGGATCTCAAGTGGCGACACCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTGAAAAGCCATCTCCAGAAATATAGGCTCCACACGAGAAGACCAAGCCCAAGCCCACAACCAGGTGCACCAGCACCGCAGCTTGTGGTCCTAGGAGGAATCTGGGTCCCACCAGAGTACGCCACAGCTGCCGGAGCCCCTGCCGCCATCTACGGTGCTCACCACCCCGCCTCCCACGCCCCGCCACCGCACTACTGCGCGGCCACCCCAATGCCTCAGGAGTTCTACACGGCGGCTCCACCTCAGCCTCTGCTTCCGCCTCCGCCTCCTCCGCACCACCTGCACATGTACAAGGCGGCTGGACAGAATAGCTCCCCTGAGTCGGAGGTAGGAGGATGCGGAGAGCGGTCGGAGAGCATCGAGGATGGGAAATCGGAGAGTAGTAGCTGGAAGGGTGAGAGTGAAGGAGAGAGGAAAGGGTTGAATGAGGAGAGTAATTGCAGTGACATCACTCTCAAATTCTAG 1344 0.5164 MASPSELSLDCKPHSYSMLLKSFGDHNNSNSNDQEQNQSYKIEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFNQGTTRPVLEEFIPIKHSEISEKEAPSSMNMMMSDNKANWMTSAQLWSQSSQEGTTSAATPPPSKDADNNNNIGFMSMSPNKHRNGGSGGAFLPFSKERRNNNSCTLGGELALASPDKEMLIMDDDNNNNNKRDHSSSNDQGKGTTTSSATPPPSTTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQPGAPAPQLVVLGGIWVPPEYATAAGAPAAIYGAHHPASHAPPPHYCAATPMPQEFYTAAPPQPLLPPPPPPHHLHMYKAAGQNSSPESEVGGCGERSESIEDGKSESSSWKGESEGERKGLNEESNCSDITLKF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00689 447 MobiDBLite consensus disorder prediction 394 447 - -
Aip10g00689 447 MobiDBLite consensus disorder prediction 130 179 - -
Aip10g00689 447 MobiDBLite consensus disorder prediction 224 249 - -
Aip10g00689 447 MobiDBLite consensus disorder prediction 205 255 - -
Aip10g00689 447 MobiDBLite consensus disorder prediction 205 223 - -
Aip10g00689 447 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 447 - -
Aip10g00689 447 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 304 IPR006447 GO:0003677
Aip10g00689 447 Gene3D - 248 306 - -
Aip10g00689 447 MobiDBLite consensus disorder prediction 130 168 - -
Aip10g00689 447 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 447 IPR044787 GO:0003700|GO:0006355
Aip10g00689 447 MobiDBLite consensus disorder prediction 407 437 - -
Aip10g00689 447 Pfam Myb-like DNA-binding domain 251 302 IPR001005 -
Aip10g00689 447 Coils Coil 42 62 - -
Aip10g00689 447 SUPERFAMILY Homeodomain-like 246 307 IPR009057 -
Aip10g00689 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 306 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00689 Aip-Chr10 7678538 7680455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00689 1 371 G2-like Transcription Factor Family AT2G03500 53.488 8.19e-119 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip10g00689 Myb_DNA-binding 9.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00689 - - gmx:100807925 498.049