Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00679 ATGGGACGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACGAGTCGGCAAGTAACGTTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCTAAAGAATTATCCATTCTCTGTGATGCTGAAGTTGGATTGATTGTGTTTTCCAGCACTAGCAAGCTTTATGAATATGCAAGCACCAGCATGAAATCAATTATTGAACGCTACAACAAGCTTAAGGAAGAACATAATCAGCTGATGAATCCAGCTTCCGAAGTCAAGTTTTGGCAGAGAGAAGCTGCAAGCTTGAGGCAACAACTGCAGCACTTGCAAGAATGCCACAGCAGGAAACTGATGGGCGAAGAGCTTTCTGGACTGGGTGTTCAAGAACTACAAAATCTTGAAAACCAACTGGAGATGAGTTTAAAGGGTGTTCGCATGAAAAAGGATCAAATTTTCACAGATGAGATTAAAGAACTACACCAAAAGGTTTCAGATATTTCCGATTTTTTCTCTTTGCATGCCTTGACTTAG 513 0.4094 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTSKLYEYASTSMKSIIERYNKLKEEHNQLMNPASEVKFWQREAASLRQQLQHLQECHSRKLMGEELSGLGVQELQNLENQLEMSLKGVRMKKDQIFTDEIKELHQKVSDISDFFSLHALT 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00679 170 ProSiteProfiles K-box domain profile. 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip10g00679 170 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Aip10g00679 170 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip10g00679 170 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip10g00679 170 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip10g00679 170 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Aip10g00679 170 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aip10g00679 170 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 158 - -
Aip10g00679 170 Coils Coil 86 106 - -
Aip10g00679 170 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 158 - -
Aip10g00679 170 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aip10g00679 170 Pfam K-box region 84 160 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip10g00679 170 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip10g00679 170 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip10g00679 170 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00679 Aip-Chr10 7102830 7112539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00679 1 156 MADS-box Gene Family AT2G14210 77.070 8.83e-78 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip10g00679 K-box 5.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00679 K09264 - tcc:18608170 273.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00679 10 7102830 7112539 Aip10g00679 10 7102830 7112539 ECH