Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00654 ATGCTAGTTGGTGAAGATCAACACAAAAAGTCCACAAAACAACAAAGAGGTGGTGGAGCCATGAAGAAACCCGTGAGCATCACAGTATATCATATATCTCTTGATGAGATATTAGGAAGAGTTAATTATCTTATGGAGATTTCATCTGAATTGGGTATAATGGAGGATCCTAATAGCTTTCTCTGGCACTTAAGCTCTATTGATACTTGTGCTACTACCTTAGCTGTTTTTGGAGATAGCTTGCAAAAGAATAATCCATTATTCTGTAACTCAAACTTGATGAACTCCAAGATTTCCATGATGGAAACTACTACTTCACCTACTGCTACTATAATTGAAAGACCAGCAAAACAGCTTAGAAGTAACAACACTAGTAATTGGAGTAGTCACATTAACAAGACACCAGAGTCACACTTTGTTGGTTCTTGCTCAAATAATATTCTCTCCTTTGTTGACAACACAAATCATCATCATCATCAATTGGGGTTAGTAATGAAGCCTAAGGTTGAGATTATGAATAGTAGTAGTCCTAACAACATAGATACTCAAGGAACAACCTTGTTGGGGAATAATAATAATAATCATCATAATCATGAAAACTATCTATTCAAAGAATCATCATGCCATGAGGCTAAGAACTTTGGGCAACGTCCTAAGCTTTCTTCTCATCAACCTCATGATCACATCATTGCTGAGAGGAAGCGCAGAGAGAAGCTCAGCCAGCGCTTCATTGCTTTATCTGCCCTTGTTCCTGGCCTCAAAAAGATGGATAAAGCTTCTGTTCTGGGAGATGCTATAAAGTACTTGAAACAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAAAAGAAGAAGACCGTGGAATCAGTGGTAATGGTGAAGAAATCTCAGTTATGTAATGATGATGAAGACTCTTGCTCTTCAGAGACTGAGCCGCTACCCGAAATTGAAGCAAGATTTTGCGAAAGAAATGTGCTAGTAAGAGTTCACTGCGAGAAGAAAAAGGGTGTTATAGAAAATACAATCATTGAAATTGAGAAACTCCATCTCAAAGTCATCAATAGCAGCGTCTTAACATTTGGGACTTTTGCCCTTGATATAACCATCATTGCTCAGATGGACATGGAATTTTCCATGACAGTGAAGGAACTTGTTAAGAATCTACGTTTAGCGTTTTCAACTTTCATGTGA 1197 0.3793 MLVGEDQHKKSTKQQRGGGAMKKPVSITVYHISLDEILGRVNYLMEISSELGIMEDPNSFLWHLSSIDTCATTLAVFGDSLQKNNPLFCNSNLMNSKISMMETTTSPTATIIERPAKQLRSNNTSNWSSHINKTPESHFVGSCSNNILSFVDNTNHHHHQLGLVMKPKVEIMNSSSPNNIDTQGTTLLGNNNNNHHNHENYLFKESSCHEAKNFGQRPKLSSHQPHDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYLKQMQEKVSALEEEQKKKKTVESVVMVKKSQLCNDDEDSCSSETEPLPEIEARFCERNVLVRVHCEKKKGVIENTIIEIEKLHLKVINSSVLTFGTFALDITIIAQMDMEFSMTVKELVKNLRLAFSTFM 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00654 398 Pfam Helix-loop-helix DNA-binding domain 228 273 IPR011598 GO:0046983
Aip10g00654 398 Gene3D - 222 296 IPR036638 GO:0046983
Aip10g00654 398 CDD bHLH_AtNAI1_like 227 298 - -
Aip10g00654 398 PANTHER BHLH TRANSCRIPTION FACTOR 49 397 - -
Aip10g00654 398 MobiDBLite consensus disorder prediction 1 20 - -
Aip10g00654 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
Aip10g00654 398 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 49 397 - -
Aip10g00654 398 Coils Coil 262 289 - -
Aip10g00654 398 SMART finulus 229 278 IPR011598 GO:0046983
Aip10g00654 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 285 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00654 Aip-Chr10 6839188 6841704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00654 227 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.218 3.18e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g00654 HLH 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00654 - - aip:107624263 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00654 10 6839188 6841704 Aip10g00654 10 6839188 6841704 ECH