Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00618 ATGAAGGATTTGGTTACTCTAAATAGATTCAATTTGATGCTCCAGGTGTTCAAACAAAATGCCTTCTCATCTCCTTCTGATCAGCTTGGTAGCAAATTAATTATCATCACTGTGGGGCATCAAAATGATATTCCAGGTCATGCAGCATTGGACTTTGAAAGGGTGGTGAGAGAACATGTTGTGCTGGAACATGAAGTCCCCGTTTACAAGGCTGTTCAAAAGCTAAGGGAGTTTGTGATTACCTTCGCTAAGGCAGACCATGCTGGATTCAGTCATGGTTTCAACGGCGGAGAAGCTATGAACTTTGCAATTAGTGATTGGTTTCCTTTAAGAGCTATTGCTAGCCGGATATATGCACTGCTTAATAGGATTCCTTTGCTTCACCATGAAGAACTTCTATGCAAAGAAGCAATGCTTCTGTATGCATCCATGGAGCTTGAAGCTTCACATACCAGCATCCTATTAAGGTTTCTTTTGTTAATTTGA 486 0.4074 MKDLVTLNRFNLMLQVFKQNAFSSPSDQLGSKLIIITVGHQNDIPGHAALDFERVVREHVVLEHEVPVYKAVQKLREFVITFAKADHAGFSHGFNGGEAMNFAISDWFPLRAIASRIYALLNRIPLLHHEELLCKEAMLLYASMELEASHTSILLRFLLLI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00618 161 ProSiteProfiles JmjC domain profile. 1 119 IPR003347 -
Aip10g00618 161 SUPERFAMILY Clavaminate synthase-like 57 135 - -
Aip10g00618 161 Pfam JmjC domain, hydroxylase 44 102 IPR003347 -
Aip10g00618 161 Gene3D Cupin 43 146 - -
Aip10g00618 161 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 60 151 - -
Aip10g00618 161 PANTHER LYSINE-SPECIFIC DEMETHYLASE 60 151 - -
Aip10g00618 161 SMART cupin_9 2 119 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00618 Aip-Chr10 6466188 6468077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00618 44 133 C2H2 Transcription Factor Family AT5G04240 33.043 1.14e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip10g00618 JmjC 2.4e-11 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00618 - - vvi:100266131 148.288