Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00609 ATGGGTTCATCGGAAAACCCCAATTGGGTTCTGGACTACGCATATCTCGATGACATTCACTCTCTTTCTGACCCTTCCAACTTCTCTTGGCCCCCTCCTCCAACCTCCCTAAGTGCCGACCTTCATCAATCGCTTCCCAATTCTCATGGACCCGATCAATCTGCCTCAAGAAAACGCTTGAGGTCATCTGGTTCAAAAGCGTGTAGAGAGAAAATGCGAAGGGATAGATTGAATGACAGATTTTTGGAACTTGGTTCCATTTTGGACCCCGGAAGGCCTCCCAAAACGGACAAGGCTGCTATACTGAGTGACGCGGTTCAACTGGTGTCGCAGCTGCGAGGGGAGGCTCAGAAGCTTAAAGAATCAACTGAGAATCTGCAGGAGAAAATCAATGAATTGAAGGCCGAGAAAAATGAGCTCCGTGACGAGAAGCAACGGCTAAAAGCAGAGAAAGATAGCCTTGAGAAGCAGCTCAAAGCCTTGAATACACCACCTGGTTTCCTGCACCATCCTCCTACACTTCCAGCTGTTTTCCCTCATGCACCAGGGCAAGTTCTTGGAAGCAAGCTGGTGCCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTCGACACATCGCAGGACCATGTACTCCGGCCCCCGGTTGCATAA 672 0.5 MGSSENPNWVLDYAYLDDIHSLSDPSNFSWPPPPTSLSADLHQSLPNSHGPDQSASRKRLRSSGSKACREKMRRDRLNDRFLELGSILDPGRPPKTDKAAILSDAVQLVSQLRGEAQKLKESTENLQEKINELKAEKNELRDEKQRLKAEKDSLEKQLKALNTPPGFLHHPPTLPAVFPHAPGQVLGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00609 223 PANTHER BHLH TRANSCRIPTION FACTOR 2 223 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Aip10g00609 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 137 IPR036638 GO:0046983
Aip10g00609 223 CDD bHLH_AtILR3_like 66 141 - -
Aip10g00609 223 Coils Coil 102 164 - -
Aip10g00609 223 MobiDBLite consensus disorder prediction 24 74 - -
Aip10g00609 223 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Aip10g00609 223 Gene3D - 61 141 IPR036638 GO:0046983
Aip10g00609 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Aip10g00609 223 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 2 223 - -
Aip10g00609 223 SMART finulus 67 118 IPR011598 GO:0046983
Aip10g00609 223 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00609 Aip-Chr10 6342167 6343694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00609 1 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.120 5.99e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip10g00609 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00609 - - mnt:21402686 311.612