Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00586 ATGACGAATTCTAACGCTGTAGAGAATCACAGAAACAACGTCGGCGTCGCCACAAAACAAACGAAGAAGATCAACAGAGAGGAGAAAGGCAAGTCCTCATCGATTTCCTCGTTCGTGTGCGAAATCTGCATTGTGACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTGCCCCGGTGCCGTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGCGAGAGCAAGAGATTCCTGTATGACCGCCGCTCCAACGATGGTCCACACCCTAGGCAGATGTGCGTCACGTGCACGGATGAAGATAGAATGATGATGAAGTTAGCGGAGAGGAACGGGTGGAAGAGGTGCCCAAAGTGCAGGTTCTACGTTGAGAAGAAACCTTTCACGTGCAGTAGAATACTTTGCAGGTGTGGACATGTCTTCTGCTATGGCTGTGGCGGTTCCCCCTGTGGCGGTTCCCCCTGTGTCGGTTCCACCTGTGGCGGTTCCGCCTTCTTTCCTCCATCATGGTTTATTGGTCTGTCAATTCTATTTGGATTTATCATTCTTTTTATACGTTTGACTGaaggtaaaaactcagatgcactcgacttcatatga 747 0.4726 MTNSNAVENHRNNVGVATKQTKKINREEKGKSSSISSFVCEICIVTKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCRGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYDRRSNDGPHPRQMCVTCTDEDRMMMKLAERNGWKRCPKCRFYVEKKPFTCSRILCRCGHVFCYGCGGSPCGGSPCVGSTCGGSAFFPPSWFIGLSILFGFIILFIRLTEGKNSDALDFI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00586 248 SUPERFAMILY RING/U-box 37 117 - -
Aip10g00586 248 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 127 IPR031127 GO:0004842|GO:0016567
Aip10g00586 248 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 196 IPR031127 GO:0004842|GO:0016567
Aip10g00586 248 ProSiteProfiles TRIAD supradomain profile. 36 248 IPR044066 -
Aip10g00586 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 120 IPR013083 -
Aip10g00586 248 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 127 - -
Aip10g00586 248 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 147 196 - -
Aip10g00586 248 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
Aip10g00586 248 Gene3D - 140 210 - -
Aip10g00586 248 ProSiteProfiles Zinc finger RING-type profile. 40 88 IPR001841 -
Aip10g00586 248 SUPERFAMILY RING/U-box 149 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00586 Aip-Chr10 6030543 6031289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00586 33 210 ARIADNE family AT3G27710 22.222 1.79e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00586 K11975 - dcr:108211421 152.525