Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00583 ATGGCGGCTCAGCTACCAGAACACTTCAAGTGTCCGATTTCACTCGAAATAATGTCCGACCCAGTCATACTCTCCTCCGGCCACACATTCGACCGCTCCTCCATACAGCGCTGGCTCGATGCAGGCCACCGCACCTGCCCAATTACCAAACTGCCCCTCCCGGATCATGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCACTCCAACTCCAATTCCCAATCCCTCACCTCCCCACCCCCAACCCGAAACCCTAATCTCTTCCCTCACCTCCTCCGCTTCCTCTTCTTCCTCCAAGCTTGACTCGCTCCACAAACTCACTCGACTCGCCAAGCGCGACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTGCGTCGACTCCCACGACCACGATTCCCTCCGCGAGAACGCTCTCTCTTTGCTTCTCATTCTCAGCCTCGACGACCACAACAAGGTTGGACTCGTCGCCGAGGGAGTCGTTGCCCGCCTCGTCGCCGTCATCTCCGGAACGGCTGCAGGAAATCCATCCCCGGACTGCCGCGCGCTCGCAGCCACCACACTCACAAGCCTGGCCGTCGTGGAGGTCAACAAGGCCACAATCGGCGCGTACCCTCACGCGATCGAGTCACTCGTGGCCCTCGTAAGGGACGGAAAGGGGAGAGAGAAGAAGGAAGCAGCGACGGCGCTCTATGCTCTCTGCTCCTTCCCGGACAACCGGCGGAGGGCGGTGGAGTGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGCTTGGAGAGGGCCGTTGAGGTTGTTGGAGTTCTTGCAAAGTGTAAGGAAGGGAGGGAACAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGTCGGGTTCTGAGGAATGGAAGCTCAAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCGTTGTGTTGTGGCAGTGAAGTTGCTTCTATGGAAGCCATCAGAGAAGGCCTTTTGGAAACATGTCTTGGCTTTCTGGAAGATGATAACGAGAAAGTGAGAAGGAATGCTTCCGCTTTGCTTCAGAATCTGCGTGGCAACAATAGGATCAGCTGA 1257 0.4932 MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASLIPNHALRSLISNFTPLTPTPIPNPSPPHPQPETLISSLTSSASSSSSKLDSLHKLTRLAKRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCVDSHDHDSLRENALSLLLILSLDDHNKVGLVAEGVVARLVAVISGTAAGNPSPDCRALAATTLTSLAVVEVNKATIGAYPHAIESLVALVRDGKGREKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLERAVEVVGVLAKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASMEAIREGLLETCLGFLEDDNEKVRRNASALLQNLRGNNRIS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00583 418 SUPERFAMILY ARM repeat 184 411 IPR016024 -
Aip10g00583 418 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Aip10g00583 418 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 186 415 - -
Aip10g00583 418 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 121 - -
Aip10g00583 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Aip10g00583 418 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Aip10g00583 418 Coils Coil 390 410 - -
Aip10g00583 418 Coils Coil 120 121 - -
Aip10g00583 418 MobiDBLite consensus disorder prediction 76 90 - -
Aip10g00583 418 MobiDBLite consensus disorder prediction 91 105 - -
Aip10g00583 418 SMART arm_5 330 371 IPR000225 GO:0005515
Aip10g00583 418 SMART arm_5 254 292 IPR000225 GO:0005515
Aip10g00583 418 SMART arm_5 372 413 IPR000225 GO:0005515
Aip10g00583 418 SMART arm_5 205 250 IPR000225 GO:0005515
Aip10g00583 418 MobiDBLite consensus disorder prediction 71 105 - -
Aip10g00583 418 PANTHER U BOX DOMAIN-CONTAINING 186 415 - -
Aip10g00583 418 SUPERFAMILY RING/U-box 3 73 - -
Aip10g00583 418 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Aip10g00583 418 PANTHER U BOX DOMAIN-CONTAINING 2 121 - -
Aip10g00583 418 Gene3D - 317 417 IPR011989 -
Aip10g00583 418 Gene3D - 180 316 IPR011989 -
Aip10g00583 418 CDD RING-Ubox_PUB 9 50 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00583 Aip-Chr10 5975581 5976837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00583 182 413 U-box Gene Family AT4G21350 59.052 6.96e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00583 - - zju:107421885 427.943