Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00562 ATGTTCCACCTTGGATTCTTCAACCTTACCACCAACTCATCAACATCATTTTACCTCGGAATCTGGTACATAACCAACCCCCCTGTCGTCTGGGTTGCTAACAGAGACCAACCTATCAAAGGTGATGATAGTGTAGCAGTGCTCAAGATATCCGAGGATGGAAACCTTGTTGTCATGGATGCACGTAATAATGAGATCCTTTGGTCAACGAACGTCTCAAACATCGCATCCCCCAACACCACAAGTGCTCAGCTTCTCACCACCGGAAACCTTGTGTTGCAAGATAACGCCACAGGGACGATACTGTGGCAGAGAATTTTGATTTGCGCGTTTATCCTGTGGAAAAGAAAAACTGCAATAAGAGATGAGCAGAAGAAGAAAAATCATGCCGCAGTGATCATTGCAGTTACAGTCTCAGTAGCAGGAACTATTGGGATTGTGATTTGCGCGTTTATCCTGTGGAAAAGAAGAACTGCAATGGGAGCTTGTGGGTGCACGCGCCACCTCCGTTACGGGACTTGCTATGCAGTGCGCAGCTGCAATTGCGGTAGTAGGGCCGGCGCTCCATGCAGTGGTCAAACCCAGAGATGCTCCCCTCAAAGATCGGCCGGAAAAGACCATCTGCTGCGGGCCGGAGGCCATGCCAAACAGCACCCGAACCAGGAAGGAAAAATATGTGTTGCCTTTAGCACTGGCTTCCTTCCTTGGTTGTTATCGCTTCTCCTGCAACGGGGCGGATCAATCAACATGCAGAGTTCATCGGCCTTTGCTAcggagggagactgcagtggcgtcggtgcagccggcgggggtgcagcggcgagaaccatgacggcaaagatgcgtattagaggttacgAGAGAGCAAATTTCAGACTACCTACAATAAGCAACACAAAATACCCAAGCAAAGTTAAACTCCCGGAGCTTTCCCAATTTGAGTTTGAAAAGCTTGCAATTGCAACAGATAACTTTCACTTAGCTAATAAGCTGGGGCAAGGAGGATTTGGACTAGTATATAGGGGAACATTGGAAGATGGACTAGAAGTAGCAGTTAAAAGACTTTCAAGAGCATCATGTCAAGGATTAGAAGAATTTATGAATGAGGTTCTAGTAATATCAAAACTTCAGCACCGTAATCTTGTTAGACTTCTTGGATGTTGTGTAGAAGGAGATGAGAAGATTTTGGTGTATGAATACATGCCAAATAAAAGTTTAGATGCATATCTGTTTGATTCATGTAAGCAAGTATTAAATTGGGAAAAACGTTTTCATATTATCGAAGGAATAGCTCGAGGTTTACTTTATCTTCACAGAGACTCTCGACTAAGAATTATCCATAGAGATTTAAAGCCAAGCAATATATTACTTGATGAAGAGCTAAATCCAAAGATTTCAGATTTTGGTATGGCAAGGATTTTTTGCCACACTGAAAATGAGGCAAATACTATGAGAGTTGCTGGGACATATGGTTATATGTCACCGGAATATGCTATGGAAGGATTATTTTCAGAAAAGTCTGATGTATTCAGCTTTGGTGTTTTACTACTAGAGATTGTCAGCCGTAGAAAGAATACTAGATTTTATGAAGATGCAGAATCTTTGAGTCTTTTAGGATTTGCATGGAAACTGTGGAATGCTGATAACATTCCACCTCTGACAGATCCAGATATATCAAATCTGAGCTGCAATGAAGATATAAAGAGGTGCATACATATTGGTCTTTTGTGTGTACAAGAACTTGCAAGAGATAGGCCTACAATAACTGCAGTGGTTTCAATGCTTAATAGTGAGACTGTTAATCTTCCTTCTCCCAAGCAGCCAGCATTCGTTCAGAGGCAGACTCTGCTGGATATAGAGTCTTCTATGACAAGTGATGGATTATGCTCCATTAATAATGTGAGCCTAACAAATGTCCAAGGAAGATAA 1929 0.4007 MFHLGFFNLTTNSSTSFYLGIWYITNPPVVWVANRDQPIKGDDSVAVLKISEDGNLVVMDARNNEILWSTNVSNIASPNTTSAQLLTTGNLVLQDNATGTILWQRILICAFILWKRKTAIRDEQKKKNHAAVIIAVTVSVAGTIGIVICAFILWKRRTAMGACGCTRHLRYGTCYAVRSCNCGSRAGAPCSGQTQRCSPQRSAGKDHLLRAGGHAKQHPNQEGKICVAFSTGFLPWLLSLLLQRGGSINMQSSSAFATEGDCSGVGAAGGGAAARTMTAKMRIRGYERANFRLPTISNTKYPSKVKLPELSQFEFEKLAIATDNFHLANKLGQGGFGLVYRGTLEDGLEVAVKRLSRASCQGLEEFMNEVLVISKLQHRNLVRLLGCCVEGDEKILVYEYMPNKSLDAYLFDSCKQVLNWEKRFHIIEGIARGLLYLHRDSRLRIIHRDLKPSNILLDEELNPKISDFGMARIFCHTENEANTMRVAGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIVSRRKNTRFYEDAESLSLLGFAWKLWNADNIPPLTDPDISNLSCNEDIKRCIHIGLLCVQELARDRPTITAVVSMLNSETVNLPSPKQPAFVQRQTLLDIESSMTSDGLCSINNVSLTNVQGR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00562 642 Pfam Domain of unknown function (DUF3403) 597 642 IPR021820 GO:0004674
Aip10g00562 642 ProSiteProfiles Bulb-type lectin domain profile. 1 106 IPR001480 -
Aip10g00562 642 Gene3D - 2 106 IPR036426 -
Aip10g00562 642 CDD STKc_IRAK 331 596 - -
Aip10g00562 642 Pfam Protein tyrosine and serine/threonine kinase 326 594 IPR001245 GO:0004672|GO:0006468
Aip10g00562 642 ProSiteProfiles Protein kinase domain profile. 325 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00562 642 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Aip10g00562 642 CDD B_lectin 2 104 IPR001480 -
Aip10g00562 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Aip10g00562 642 Gene3D Phosphorylase Kinase; domain 1 299 400 - -
Aip10g00562 642 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 306 641 - -
Aip10g00562 642 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 12 105 - -
Aip10g00562 642 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 306 641 - -
Aip10g00562 642 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 105 - -
Aip10g00562 642 Gene3D Transferase(Phosphotransferase) domain 1 401 607 - -
Aip10g00562 642 SMART serkin_6 325 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00562 642 SMART blect_4 1 105 IPR001480 -
Aip10g00562 642 SUPERFAMILY Protein kinase-like (PK-like) 311 625 IPR011009 -
Aip10g00562 642 Pfam D-mannose binding lectin 29 105 IPR001480 -
Aip10g00562 642 SUPERFAMILY alpha-D-mannose-specific plant lectins 19 104 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00562 Aip-Chr10 5618764 5622176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00562 312 642 Receptor kinase-like Gene Family AT3G45860 55.882 2.74e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip10g00562 PK_Tyr_Ser-Thr 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00562 - - ahf:112785328 986.482