Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00556 ATGAGGAAGAAGTGTGAGCTGTGTAACTGTGCTGCAAACTTGTTCTGTGATTCAGATCAAGCAAGCCTTTGTTGGGAATGTGATGCAAAGGTTCACAGTGCAAACTTTCTGGTCACAAAGCATCCAAGGATTCTTCTATGCCATGTTTGTCAGTCACTAACACCTTGGCATGGTTCAGGTCCCAAGTTTGTTCCCACCATGTCACTTTGCACTGATTGTGTCACCAAAAACAATGATACCTGCAACCACCAGAATGATGATGACGACTATGATGATGTAGAAAATGATGGTGTTGATGGTGGTGAGGATGAAGATGAAGATGAAGATGAAGAAGAAGAAAATCAAGTGGTTCCATGGACATCATCAACATCAATGCCTCCACCACCAGTTTCCTCTTCTTCAAATAGTGCAACCACTTCCACCAGATTCTCTAATGATGCTGAAGAAGAAGCAATCTCCAACTGA 465 0.4258 MRKKCELCNCAANLFCDSDQASLCWECDAKVHSANFLVTKHPRILLCHVCQSLTPWHGSGPKFVPTMSLCTDCVTKNNDTCNHQNDDDDYDDVENDGVDGGEDEDEDEDEEEENQVVPWTSSTSMPPPPVSSSSNSATTSTRFSNDAEEEAISN 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00556 154 MobiDBLite consensus disorder prediction 116 154 - -
Aip10g00556 154 CDD Bbox1_BBX-like 4 46 - -
Aip10g00556 154 MobiDBLite consensus disorder prediction 85 115 - -
Aip10g00556 154 PANTHER B-BOX TYPE ZINC FINGER PROTEIN 3 148 - -
Aip10g00556 154 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 148 - -
Aip10g00556 154 SMART bboxneu5 1 46 IPR000315 GO:0008270
Aip10g00556 154 MobiDBLite consensus disorder prediction 79 154 - -
Aip10g00556 154 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00556 Aip-Chr10 5567913 5568377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00556 1 127 C2C2-CO-like Transcription Factor Family AT4G27310 40.244 6.36e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip10g00556 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00556 - - gmx:100805832 159.458