Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip10g00552 | ATGGAGTTTGATCTTGAAGACCCTTTATCCTGCTTCAAGGAACAACAAGCTTATACCATAACAGAACTCTTTGCTTCTGAATCTGATCACATGCCGGCCCCAAACTACTTGAATTCAACACATTTTCGCGCTTCCTTTCGTTGCGAAGCCATTTCTCTCATACTTCAGGTCCAGTTTTCATGCAATTTGGACCCTTATGTAGCTTATCTAGCTATAAATTACTTGCATCGCTTCATGTCGAGGCAAGAAATTCCGATGGAGAAGCCATGGTTACTGAAACTTGTTGTCATATCCTGCCTTTCTCTTGCTTCAAAGATGAAGAACACACCCTTATCAATTTCTGATATACAGATAGAAGGTTGCATCTTTGAGTCTCAAACTGTTCGGAAGATGGAGCTTCTTATTCTTGGCGCTCTGGAATGGCGTATGAGGTCAATTACACCTTTTCCTTTCTTGCATTTCTTCATCTCTTCAACAGAACTCAAAGATCCATCACTGAAGCAAGTGCTTAAAGAGCAAGCTACAAAGATAATCTTCAATGCTCACAATGACATTAAGCTTTTAGAGTATAAACCTTCAACTATTGCAGCATCTGCTCTTATCTCTGCATCTCGCGAACTATGTCCGCAGCAATATACTATGCTGAGAGCTTCAATTGCAGCTTGTGAGAATCTAGATGAGGATTCATTGACCAAGTGCATTGACCTGATGCAAGAGATGGTTATGTGGACGGAAGCGAACGAGTCAACCATCGATACAAGCTTTCTAAGCACTGAAACTCCGGTGAGCGTGCTGGAGAGAAGCATCAAGCGGCGGAGAATCTAA | 825 | 0.4194 | MEFDLEDPLSCFKEQQAYTITELFASESDHMPAPNYLNSTHFRASFRCEAISLILQVQFSCNLDPYVAYLAINYLHRFMSRQEIPMEKPWLLKLVVISCLSLASKMKNTPLSISDIQIEGCIFESQTVRKMELLILGALEWRMRSITPFPFLHFFISSTELKDPSLKQVLKEQATKIIFNAHNDIKLLEYKPSTIAASALISASRELCPQQYTMLRASIAACENLDEDSLTKCIDLMQEMVMWTEANESTIDTSFLSTETPVSVLERSIKRRRI | 274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip10g00552 | 274 | SMART | cyclin_7 | 52 | 137 | IPR013763 | - | |
| Aip10g00552 | 274 | PIRSF | Cyclin_A_B_D_E | 21 | 267 | IPR039361 | - | |
| Aip10g00552 | 274 | PANTHER | CARBOXY-TERMINAL DOMAIN CYCLIN | 5 | 272 | - | - | |
| Aip10g00552 | 274 | Gene3D | - | 33 | 144 | - | - | |
| Aip10g00552 | 274 | SMART | Cyclin_C_2 | 146 | 268 | IPR004367 | - | |
| Aip10g00552 | 274 | PANTHER | CYCLINS | 5 | 272 | IPR039361 | - | |
| Aip10g00552 | 274 | Pfam | Cyclin, C-terminal domain | 146 | 247 | IPR004367 | - | |
| Aip10g00552 | 274 | CDD | CYCLIN | 47 | 136 | IPR013763 | - | |
| Aip10g00552 | 274 | SUPERFAMILY | Cyclin-like | 11 | 143 | IPR036915 | - | |
| Aip10g00552 | 274 | Pfam | Cyclin, N-terminal domain | 21 | 143 | IPR006671 | - | |
| Aip10g00552 | 274 | Gene3D | - | 22 | 235 | - | - | |
| Aip10g00552 | 274 | SUPERFAMILY | Cyclin-like | 127 | 245 | IPR036915 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip10g00552 | Aip-Chr10 | 5544443 | 5546503 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aip10g00552 | 1 | 267 | Core Cell Cycle Gene Families | AT4G03270 | 44.128 | 6.32e-66 | 206 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip10g00552 | K18812 | - | gmx:100799985 | 376.326 |