LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g00549	ATGGGAAAAAAACGGAATAAGGTGGAAGAAGCTCTGCCAGACAACCTGCGGTGCAGCCGCACCGACGGTCGGCAATGGCGGTGCCGGCGGCGCGTGATGGACAACCTCAAACTCTGCGAGCTCCACTACCTTCAAGGGCGCCACCGCCAGTACAAGCAGAAGGTTCCGGAGTCACTGAAGCTTCAGAGAACAACGAGCACCAAGACGGAGGGGCAAAACAGCACCACTTCCCAAAACGACCCCGTTTTGAAGAGCACCGAAATTAGCGCGAGGATTTCAAAGTTGATGATGCTCAGGAGGAAGAAGAGGAAATTATCCGGGGGTTCAGAGGGTGGTCCGATTAAGAAGAAGAGTAAGAAGAAGAAGAAGAAGGAGAAGCGTGATGCGCATTTGGAACTGCTAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAGCAAAGGGAAGAAGAAGGATCAGAGTGAGAATGGGAATGTGGAGGAGGATTTGGAGCTGCACCATTACTATGATGAGGGTGAGCTCAGGAGGGAATTGCCCAATGGTGTTATGGAGATTGCTCCTGCTGCTTCAACCCCACATGATTACACCAATGTGGGTTCCCATTTTGATGTCAAAGTTGGAATCTTTGATCATGGCAGAGCTCTTACACCCCGTTACTTCAGGTCCAAGAATGTTGAGAGAGACCCTGTTGGCAAGTTGCAGGTTGTGCCTTATGGAGTGAACTTGAAGAAGGGTAAGAGGAAGAAGTGCCATTGGTGCCAGAGAAGTGATTCCTGGAATCTGATAAAGTGTTCTCGCTGCCAGAAAGAGTTTTTCTGCATGAATTGCATTAAAGAAAGGTATTTTGACACCCAAAATGAAGTTAAGATGGCTTGTCCAGTGTGTAGAGGAACTTGCACTTGTAAAGATTGCTTGGCTATTCAACGTAAAGACAGAGAAAGTAAGGAATATTTAGCTGGTAGAAGCAGAGTTGATAGAATATTGCATTTTCATTATTCAATCTGTATGCTGCTTCCTGTACTGAAACAAATAAGTGAAGATCAGCATATTGAGCTGGAAACAGAAGCGAAAATGAAAGGGAAAACAATCACTGATATTCTCGTCAAGCAGGTTGAATTCGGCCGCAATGAGAAGAATTACTGCAATCACTGCAAAACACCCATCCTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTATAGCCTTTGCTTAAGTTGTTGTCAGGAATTAAGACAAGGAAGAATCTCTGAAGAAGTTGGCTCTCATTTGTCCAAGCTAGCTGACGAAATACACAGTTGTACTGCTGGTGAAAACCAACTTTTGGATGATGAGGCCATTTTACACGAAAACTCAACTGGCTCTTCAACGTTGCCTGAATCGTCGGGGTTTGATGGTACCTGTGGCGTGTCATGTCCATCTACAGAGTTAGGTGGTTGTGGCGATAGCCATCTTGATTTGAGATGTCTTTTTCCCTTAAGCTGGATTAAAGAAATGGAAGTAATGGCAGATGAAATAGTTTGTAGCTATGAATTTCCAGAAATTTTGGATAAAAGTTCATCCTGCTTACTGTGTATTGACAGAGATCAGCAGCTGCAAAAGGCAGCTCAAAGAGAAGATTCTAATGATAATTGTTTGTTTTATCCTACGATTTTGGACATTACTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGGAAGGGCCATCCTGTAATAGTGCAAGATGCACTCAAGAGTACTTCAAACCTCAGTTGGGATCCACTCGTCTTGTTCTGTGCTTATCTTGACAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATCAACATTAGGCAGTATTTTACTGGGTCCCTCAAAAGTCAGCCCCAGAGGAATGCTTGGCATGAGATGTTGAAAATAAAAGGCTGGTTGTCTTCCCAGCTATTCAAAGAAGAGTTTCCAGCTCATTTTGCTGCAATAATTGATGCCATACCAATTCAAGAATACATGAATCCCATGTCTGGTTTCCTCAACATGGCTGTAAATTTGCCACAGGGGACTACAAAACATGACATGGGACCATATATCTATATCTCATACGGCTGCGCTGATGAAGAAACTGATTCTGTGACCAAACTATGTTACGACTCATATGATTTGGTTAACATTATGGCACATACCACAGATGTCCCTCTGTCTGCAGAACACCTTACTAAAATACGCAGATTATTGAAAAAGCACAAAGCTCTATGTCGAAGGGAGTCTTCCAAAATTACTGCTGAGCATGCTGAAGACACAGAACAAAATGGACATCAAGGTGTGGTAAGAGAAGGGATGGACTTTTTCAGGAGAGTCAATAGAATATCTTCTATCCCCACTGAAGCCAGAACGAAAACTAACCACAGTTTAGACACCGATATCTCTGGGAGTGGAGAATGTGATTTAGTTTCTGATGCTGGAAAAGCGGAAAGTTCTTCACCTATCCACAAGACAGTTAAAAGCACTGAAATGTCTCCAGACCATGATAATACTAGAAGAACCTTTGAAAATCCGAACGGTGATAAAAGCAAGTTTACTGAGGATTCGGGTGCTCAGTGGGATGTCTTTCGGAGAGAAGATGTACCAAAGCTCTTGGAATACCTCAAAAGGCATCATGATGAATTTTCTTATAGCCATGAATACCAAGAGGAGATGGTTCATCCAATTCTTGATCAGAGCTTCTATCTCAACAATTTTCACAAAATGAGACTTAAGGAGGAATTTGAAATTGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTTATCATTCCTACTGGATGTCCATACCAAATTCGGAATCCCAAGTGTTCTGTTCATGTGGTATTGGAGTTTGTTTCCCCTGAGAATGTTTCTGAAAGCATCCAATTGATCGATGAGGTTCGTCTGCTTCCAAAAGACCATATAGCAAAAGTAGACAAACTTGAGGTGAAGAAGATGGCTCTCTATAGCATGAATACAGCAATTAAAGAAATACGTGACTTTACAAGCAAAGCTTGA	3054	0.4267	MGKKRNKVEEALPDNLRCSRTDGRQWRCRRRVMDNLKLCELHYLQGRHRQYKQKVPESLKLQRTTSTKTEGQNSTTSQNDPVLKSTEISARISKLMMLRRKKRKLSGGSEGGPIKKKSKKKKKKEKRDAHLELLRMVLQREVEKSKGKKKDQSENGNVEEDLELHHYYDEGELRRELPNGVMEIAPAASTPHDYTNVGSHFDVKVGIFDHGRALTPRYFRSKNVERDPVGKLQVVPYGVNLKKGKRKKCHWCQRSDSWNLIKCSRCQKEFFCMNCIKERYFDTQNEVKMACPVCRGTCTCKDCLAIQRKDRESKEYLAGRSRVDRILHFHYSICMLLPVLKQISEDQHIELETEAKMKGKTITDILVKQVEFGRNEKNYCNHCKTPILDLHRSCLSCSYSLCLSCCQELRQGRISEEVGSHLSKLADEIHSCTAGENQLLDDEAILHENSTGSSTLPESSGFDGTCGVSCPSTELGGCGDSHLDLRCLFPLSWIKEMEVMADEIVCSYEFPEILDKSSSCLLCIDRDQQLQKAAQREDSNDNCLFYPTILDITSDHFEHFQKHWGKGHPVIVQDALKSTSNLSWDPLVLFCAYLDRSITRYENNKDLLEACLDWCEVEINIRQYFTGSLKSQPQRNAWHEMLKIKGWLSSQLFKEEFPAHFAAIIDAIPIQEYMNPMSGFLNMAVNLPQGTTKHDMGPYIYISYGCADEETDSVTKLCYDSYDLVNIMAHTTDVPLSAEHLTKIRRLLKKHKALCRRESSKITAEHAEDTEQNGHQGVVREGMDFFRRVNRISSIPTEARTKTNHSLDTDISGSGECDLVSDAGKAESSSPIHKTVKSTEMSPDHDNTRRTFENPNGDKSKFTEDSGAQWDVFRREDVPKLLEYLKRHHDEFSYSHEYQEEMVHPILDQSFYLNNFHKMRLKEEFEIEPWTFEQHVGEAVIIPTGCPYQIRNPKCSVHVVLEFVSPENVSESIQLIDEVRLLPKDHIAKVDKLEVKKMALYSMNTAIKEIRDFTSKA	1017

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g00549	1017	MobiDBLite	consensus disorder prediction	57	86	-	-
	Aip10g00549	1017	ProSiteProfiles	WRC domain profile.	12	58	IPR014977	-
	Aip10g00549	1017	SUPERFAMILY	Clavaminate synthase-like	556	1000	-	-
	Aip10g00549	1017	ProSiteProfiles	Zinc finger RING-type profile.	249	295	IPR001841	-
	Aip10g00549	1017	MobiDBLite	consensus disorder prediction	50	164	-	-
	Aip10g00549	1017	Pfam	WRC	13	54	IPR014977	-
	Aip10g00549	1017	SMART	cupin_9	657	980	IPR003347	-
	Aip10g00549	1017	Gene3D	Cupin	548	989	-	-
	Aip10g00549	1017	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	9	1015	IPR045109	GO:0032454\|GO:0033169
	Aip10g00549	1017	MobiDBLite	consensus disorder prediction	838	864	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g00549	Aip-Chr10	5502636	5508338	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g00549	17	93	GRF Transcription Factor Family	AT5G53660	34.524	1.84e-06	49.7

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Aip10g00549		JmjC	7.4e-09	CL0029

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g00549	K15601		-	gmx:100810673	1321.61

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