Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00549 ATGGGAAAAAAACGGAATAAGGTGGAAGAAGCTCTGCCAGACAACCTGCGGTGCAGCCGCACCGACGGTCGGCAATGGCGGTGCCGGCGGCGCGTGATGGACAACCTCAAACTCTGCGAGCTCCACTACCTTCAAGGGCGCCACCGCCAGTACAAGCAGAAGGTTCCGGAGTCACTGAAGCTTCAGAGAACAACGAGCACCAAGACGGAGGGGCAAAACAGCACCACTTCCCAAAACGACCCCGTTTTGAAGAGCACCGAAATTAGCGCGAGGATTTCAAAGTTGATGATGCTCAGGAGGAAGAAGAGGAAATTATCCGGGGGTTCAGAGGGTGGTCCGATTAAGAAGAAGAGTAAGAAGAAGAAGAAGAAGGAGAAGCGTGATGCGCATTTGGAACTGCTAAGGATGGTTCTGCAGAGAGAGGTTGAGAAGAGCAAAGGGAAGAAGAAGGATCAGAGTGAGAATGGGAATGTGGAGGAGGATTTGGAGCTGCACCATTACTATGATGAGGGTGAGCTCAGGAGGGAATTGCCCAATGGTGTTATGGAGATTGCTCCTGCTGCTTCAACCCCACATGATTACACCAATGTGGGTTCCCATTTTGATGTCAAAGTTGGAATCTTTGATCATGGCAGAGCTCTTACACCCCGTTACTTCAGGTCCAAGAATGTTGAGAGAGACCCTGTTGGCAAGTTGCAGGTTGTGCCTTATGGAGTGAACTTGAAGAAGGGTAAGAGGAAGAAGTGCCATTGGTGCCAGAGAAGTGATTCCTGGAATCTGATAAAGTGTTCTCGCTGCCAGAAAGAGTTTTTCTGCATGAATTGCATTAAAGAAAGGTATTTTGACACCCAAAATGAAGTTAAGATGGCTTGTCCAGTGTGTAGAGGAACTTGCACTTGTAAAGATTGCTTGGCTATTCAACGTAAAGACAGAGAAAGTAAGGAATATTTAGCTGGTAGAAGCAGAGTTGATAGAATATTGCATTTTCATTATTCAATCTGTATGCTGCTTCCTGTACTGAAACAAATAAGTGAAGATCAGCATATTGAGCTGGAAACAGAAGCGAAAATGAAAGGGAAAACAATCACTGATATTCTCGTCAAGCAGGTTGAATTCGGCCGCAATGAGAAGAATTACTGCAATCACTGCAAAACACCCATCCTGGATCTTCATAGAAGCTGCCTTAGTTGTTCCTATAGCCTTTGCTTAAGTTGTTGTCAGGAATTAAGACAAGGAAGAATCTCTGAAGAAGTTGGCTCTCATTTGTCCAAGCTAGCTGACGAAATACACAGTTGTACTGCTGGTGAAAACCAACTTTTGGATGATGAGGCCATTTTACACGAAAACTCAACTGGCTCTTCAACGTTGCCTGAATCGTCGGGGTTTGATGGTACCTGTGGCGTGTCATGTCCATCTACAGAGTTAGGTGGTTGTGGCGATAGCCATCTTGATTTGAGATGTCTTTTTCCCTTAAGCTGGATTAAAGAAATGGAAGTAATGGCAGATGAAATAGTTTGTAGCTATGAATTTCCAGAAATTTTGGATAAAAGTTCATCCTGCTTACTGTGTATTGACAGAGATCAGCAGCTGCAAAAGGCAGCTCAAAGAGAAGATTCTAATGATAATTGTTTGTTTTATCCTACGATTTTGGACATTACTAGTGATCATTTTGAACACTTTCAGAAACACTGGGGGAAGGGCCATCCTGTAATAGTGCAAGATGCACTCAAGAGTACTTCAAACCTCAGTTGGGATCCACTCGTCTTGTTCTGTGCTTATCTTGACAGGAGCATTACAAGATATGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATCAACATTAGGCAGTATTTTACTGGGTCCCTCAAAAGTCAGCCCCAGAGGAATGCTTGGCATGAGATGTTGAAAATAAAAGGCTGGTTGTCTTCCCAGCTATTCAAAGAAGAGTTTCCAGCTCATTTTGCTGCAATAATTGATGCCATACCAATTCAAGAATACATGAATCCCATGTCTGGTTTCCTCAACATGGCTGTAAATTTGCCACAGGGGACTACAAAACATGACATGGGACCATATATCTATATCTCATACGGCTGCGCTGATGAAGAAACTGATTCTGTGACCAAACTATGTTACGACTCATATGATTTGGTTAACATTATGGCACATACCACAGATGTCCCTCTGTCTGCAGAACACCTTACTAAAATACGCAGATTATTGAAAAAGCACAAAGCTCTATGTCGAAGGGAGTCTTCCAAAATTACTGCTGAGCATGCTGAAGACACAGAACAAAATGGACATCAAGGTGTGGTAAGAGAAGGGATGGACTTTTTCAGGAGAGTCAATAGAATATCTTCTATCCCCACTGAAGCCAGAACGAAAACTAACCACAGTTTAGACACCGATATCTCTGGGAGTGGAGAATGTGATTTAGTTTCTGATGCTGGAAAAGCGGAAAGTTCTTCACCTATCCACAAGACAGTTAAAAGCACTGAAATGTCTCCAGACCATGATAATACTAGAAGAACCTTTGAAAATCCGAACGGTGATAAAAGCAAGTTTACTGAGGATTCGGGTGCTCAGTGGGATGTCTTTCGGAGAGAAGATGTACCAAAGCTCTTGGAATACCTCAAAAGGCATCATGATGAATTTTCTTATAGCCATGAATACCAAGAGGAGATGGTTCATCCAATTCTTGATCAGAGCTTCTATCTCAACAATTTTCACAAAATGAGACTTAAGGAGGAATTTGAAATTGAACCATGGACATTTGAGCAACATGTTGGAGAAGCTGTTATCATTCCTACTGGATGTCCATACCAAATTCGGAATCCCAAGTGTTCTGTTCATGTGGTATTGGAGTTTGTTTCCCCTGAGAATGTTTCTGAAAGCATCCAATTGATCGATGAGGTTCGTCTGCTTCCAAAAGACCATATAGCAAAAGTAGACAAACTTGAGGTGAAGAAGATGGCTCTCTATAGCATGAATACAGCAATTAAAGAAATACGTGACTTTACAAGCAAAGCTTGA 3054 0.4267 MGKKRNKVEEALPDNLRCSRTDGRQWRCRRRVMDNLKLCELHYLQGRHRQYKQKVPESLKLQRTTSTKTEGQNSTTSQNDPVLKSTEISARISKLMMLRRKKRKLSGGSEGGPIKKKSKKKKKKEKRDAHLELLRMVLQREVEKSKGKKKDQSENGNVEEDLELHHYYDEGELRRELPNGVMEIAPAASTPHDYTNVGSHFDVKVGIFDHGRALTPRYFRSKNVERDPVGKLQVVPYGVNLKKGKRKKCHWCQRSDSWNLIKCSRCQKEFFCMNCIKERYFDTQNEVKMACPVCRGTCTCKDCLAIQRKDRESKEYLAGRSRVDRILHFHYSICMLLPVLKQISEDQHIELETEAKMKGKTITDILVKQVEFGRNEKNYCNHCKTPILDLHRSCLSCSYSLCLSCCQELRQGRISEEVGSHLSKLADEIHSCTAGENQLLDDEAILHENSTGSSTLPESSGFDGTCGVSCPSTELGGCGDSHLDLRCLFPLSWIKEMEVMADEIVCSYEFPEILDKSSSCLLCIDRDQQLQKAAQREDSNDNCLFYPTILDITSDHFEHFQKHWGKGHPVIVQDALKSTSNLSWDPLVLFCAYLDRSITRYENNKDLLEACLDWCEVEINIRQYFTGSLKSQPQRNAWHEMLKIKGWLSSQLFKEEFPAHFAAIIDAIPIQEYMNPMSGFLNMAVNLPQGTTKHDMGPYIYISYGCADEETDSVTKLCYDSYDLVNIMAHTTDVPLSAEHLTKIRRLLKKHKALCRRESSKITAEHAEDTEQNGHQGVVREGMDFFRRVNRISSIPTEARTKTNHSLDTDISGSGECDLVSDAGKAESSSPIHKTVKSTEMSPDHDNTRRTFENPNGDKSKFTEDSGAQWDVFRREDVPKLLEYLKRHHDEFSYSHEYQEEMVHPILDQSFYLNNFHKMRLKEEFEIEPWTFEQHVGEAVIIPTGCPYQIRNPKCSVHVVLEFVSPENVSESIQLIDEVRLLPKDHIAKVDKLEVKKMALYSMNTAIKEIRDFTSKA 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00549 1017 MobiDBLite consensus disorder prediction 57 86 - -
Aip10g00549 1017 ProSiteProfiles WRC domain profile. 12 58 IPR014977 -
Aip10g00549 1017 SUPERFAMILY Clavaminate synthase-like 556 1000 - -
Aip10g00549 1017 ProSiteProfiles Zinc finger RING-type profile. 249 295 IPR001841 -
Aip10g00549 1017 MobiDBLite consensus disorder prediction 50 164 - -
Aip10g00549 1017 Pfam WRC 13 54 IPR014977 -
Aip10g00549 1017 SMART cupin_9 657 980 IPR003347 -
Aip10g00549 1017 Gene3D Cupin 548 989 - -
Aip10g00549 1017 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 1015 IPR045109 GO:0032454|GO:0033169
Aip10g00549 1017 MobiDBLite consensus disorder prediction 838 864 - -
Aip10g00549 1017 ProSiteProfiles JmjC domain profile. 676 980 IPR003347 -
Aip10g00549 1017 PANTHER PROTEIN B160 9 1015 - -
Aip10g00549 1017 Pfam JmjC domain, hydroxylase 867 959 IPR003347 -
Aip10g00549 1017 MobiDBLite consensus disorder prediction 127 164 - -
Aip10g00549 1017 MobiDBLite consensus disorder prediction 821 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00549 Aip-Chr10 5502636 5508338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00549 17 93 GRF Transcription Factor Family AT5G53660 34.524 1.84e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip10g00549 JmjC 7.4e-09 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00549 K15601 - gmx:100810673 1321.61