Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00547 ATGGGAAGAGCACCTTGTTGTGACAAAAATGGCCTCAAGAAAGGGCCATGGACTCCCGAGGAGGATCAAAAACTAATTGATTATATTCAAAAACATGGATATGGAAACTGGAGGACTCTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTACGGTGGACAAACTATCTCCGGCCAGATATAAAGCGTGGTCGGTTCTCATTTGAAGAGGAAGAGACAATCATTCAACTACATAGCATTCTTGGCAACAAGTGGTCTGCGATTGCTTCTCGGCTACCAGGAAGAACGGATAATGAAATAAAGAATTATTGGAACACTCACATAAGGAAAAGGCTTCTGAGAATGGGAATTGATCCTGTCACACACAGTCCAAGACTTGATCTCTTGGATCTCACTTCCATTCTAAGTTCTTCTCTCTATGGAGATAATAATTCTTCACCAATCAACATCCAAAGGCTCCTTACCATGCACCCTATGGTGAACCCTCAGCTTCTCAAGTTAGCTTCCTCTATCATCTCTTCTCAACAACGTGATGAAAGCCTTGACTTCACTTCTTATCATAATCATTATGATAATCCTCAAATTCAGAACCAGAACCAGAACCAAACACAACAAGAACAACAACAACACTTTGTTCAAACTCATCAAGAGTCGGTGACTTGTGTCTCATTGCCACCTTTCATTGAACCAAACAATGATAACAATGTGAACGCATACCCGTTCAATGGAATTGCTTTAAGTTCCTTAACAGAAGAAGATTATATTGTCCCTCAATTATCGAGCTATGATTACTATAGTTCTGATAATAATAATAACAATAATAATCTTCTAGTGGGTCCTTCATCATTGTCAGAAGCTTCAACAACCTTCCATTCAAGCCCCACAACGTTGAATTCGAACATCAATGGCAGCAGCAGCACCGAGGATGAGAGTAGTAGTGACAACATGTTGAGATTTCAAATCCCAGATGTTTTGGATGTCACTCAGTTTTGTGATAATAATGTTGTTTCAGATTATTATTATTATTAG 1041 0.3958 MGRAPCCDKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDLTSILSSSLYGDNNSSPINIQRLLTMHPMVNPQLLKLASSIISSQQRDESLDFTSYHNHYDNPQIQNQNQNQTQQEQQQHFVQTHQESVTCVSLPPFIEPNNDNNVNAYPFNGIALSSLTEEDYIVPQLSSYDYYSSDNNNNNNNLLVGPSSLSEASTTFHSSPTTLNSNINGSSSTEDESSSDNMLRFQIPDVLDVTQFCDNNVVSDYYYY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00547 346 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip10g00547 346 CDD SANT 69 112 IPR001005 -
Aip10g00547 346 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip10g00547 346 CDD SANT 16 61 IPR001005 -
Aip10g00547 346 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 330 - -
Aip10g00547 346 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip10g00547 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aip10g00547 346 SMART sant 13 63 IPR001005 -
Aip10g00547 346 SMART sant 66 114 IPR001005 -
Aip10g00547 346 PANTHER PROTEIN ODORANT1-LIKE 1 330 - -
Aip10g00547 346 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip10g00547 346 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip10g00547 346 MobiDBLite consensus disorder prediction 280 318 - -
Aip10g00547 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Aip10g00547 346 MobiDBLite consensus disorder prediction 188 216 - -
Aip10g00547 346 Gene3D - 13 66 - -
Aip10g00547 346 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00547 Aip-Chr10 5463740 5464984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00547 1 334 MYB Transcription Factor Family AT4G21440 55.153 1.58e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip10g00547 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00547 K09422 - rcu:8275374 370.163