Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00542 ATGGGCTACGATGAACAACTCAAACCGTGCCGGAATAACTTGCCGGAATCCTCCAATCCCCGGCGAGTTGTCAACCTTATTTCATCCCTAATCTCCATCTCCCTCTCGATTAGGGTCTTCGCCGGAAAATGGCAACTGATTCGCAACAAGCTCGAGGAGCTCTACTCCGGTCTAGTCGGAGCCGACGACGACCCTTCACTCTCCGGCGTTCTCCCTGCGATCCTCTCCACCGCGGAGGAGTGTTCCGACCTAGCTCGCCGCTGCACCGATCTGACATACAGCGGGAAGCTTCTTATGCAGAGCGACTTAGAGGTGGTTTTCGCGAAGCTCCATTGCCATGTGAAGAAGCTGTCTGAGATGTACACGAAGGGTGTTCTCACACACAGCTACGCTCTGGTGGTCTCAAAGCCTGGACTTGGAGCTTCCAAAGAGGACATGAGGTTCTTCGTGAGGGACCTACTCACCAGAATGAAGGTTGGCGATGTTGCTATGAAGAAGCAGGCATTGATCAACCTCCACGAAGTTGCTTCCGAAGACGACAAGTACGTGAAGGTGATTGTTGAAGTCGGTGACGTTGTTCATGTTCTAGTTGATTTTCTAGGGTCCTCTGAGTTGGAGATTCAACAAGAGTCTGCAAAGGTAGTTTCTTTGATTGCGGGGTTTGATTCTTATAAAGGAGTTCTTGTTGGCGCTGGTGTTGTTGCGCCTTTGGTTAAGGTTTTGGAGTGTTCAAGTGAGACTGGCAAAGTTGCTGCTGCCTTGTGTCTGCTGAGTTTGACTGAGAATTCCGATAATGCTTGGTCGGTTTCCGCTCACGGCGGCGTCACGGCGTTGTTGAAGATTTGTGGCGGTGTAGATTGCAGAGCAGAATTGGTTTGTCCTGCTTGTGGAGTTCTGAGGAATCTGGTTGGTGTTGAAGAGATTAAGAGGTTCATGGTTGATGAAGGTGCCGTTTCAAGCTTCATTAGGCTTATGAGGTCAAGGGACGAAGCGATTCAGGTGAGTTCCATTGAGTTTCTTCAGAGTATTGCATCGGGAGATGAGTCATTGGTTAAGCAGATTGTTGTTAGAGAAGGCGGGGTTCGTGTTTTGCTGCGACTTTTGGATCCTAAATGGCCTTGTTCTTCCAAAACAAGAGAGGTAGTGATGAGGGCTATTGAGAATTTGTTCTTCTCTTGGTCTAGTTGTGTCACTATTTTGATGAGCTATGGTTTTGTGGATCAATTGATGTACTATATTCGAAACGGCGACGTTTCTGTTCAAGAATTGGCTCTCAAAGTTGCGTTTAGATTGTGTGGAACATGTGAAGATGCTAAGAAAGCTCTAGGTGATGCTGGATTCATGGCAGAGCTTGTTAAGTTTCTAAATGTGAAATCATTCGAGGTTCGAGAAATGGCGGCGGAGGCACTCTCCGGGATGGTTATGGTTGCCAAGAACAGGAAGAGGTTTGTGCAAGATGATGAAAGCATTGCTCTTCTTCTGCAGTTGTTGGATCCAGAGGAAGGGAATTCAGGTAACAACAAGTTCTTGATCTCTGTATTGATGTCATTGACGCATTGCAACAGTGGGAGGAAGAAGATTGTGAGTTCTGGGTATGCAAAGAACATAGAGAGGCTTGCATCAGAATCTCAAGTTTCTTCTGCTGACGCAAAGAGACTTGTCAGGAAGCTATCCACCAATACATTCCGCACCATGCTCAGTGGAATCTGGCACCACCACCACCACCACCACTCTTGA 1737 0.4767 MGYDEQLKPCRNNLPESSNPRRVVNLISSLISISLSIRVFAGKWQLIRNKLEELYSGLVGADDDPSLSGVLPAILSTAEECSDLARRCTDLTYSGKLLMQSDLEVVFAKLHCHVKKLSEMYTKGVLTHSYALVVSKPGLGASKEDMRFFVRDLLTRMKVGDVAMKKQALINLHEVASEDDKYVKVIVEVGDVVHVLVDFLGSSELEIQQESAKVVSLIAGFDSYKGVLVGAGVVAPLVKVLECSSETGKVAAALCLLSLTENSDNAWSVSAHGGVTALLKICGGVDCRAELVCPACGVLRNLVGVEEIKRFMVDEGAVSSFIRLMRSRDEAIQVSSIEFLQSIASGDESLVKQIVVREGGVRVLLRLLDPKWPCSSKTREVVMRAIENLFFSWSSCVTILMSYGFVDQLMYYIRNGDVSVQELALKVAFRLCGTCEDAKKALGDAGFMAELVKFLNVKSFEVREMAAEALSGMVMVAKNRKRFVQDDESIALLLQLLDPEEGNSGNNKFLISVLMSLTHCNSGRKKIVSSGYAKNIERLASESQVSSADAKRLVRKLSTNTFRTMLSGIWHHHHHHHS 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00542 578 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 571 - -
Aip10g00542 578 Gene3D - 149 578 IPR011989 -
Aip10g00542 578 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 571 - -
Aip10g00542 578 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 360 IPR000225 GO:0005515
Aip10g00542 578 SMART arm_5 262 304 IPR000225 GO:0005515
Aip10g00542 578 SMART arm_5 179 220 IPR000225 GO:0005515
Aip10g00542 578 SMART arm_5 435 475 IPR000225 GO:0005515
Aip10g00542 578 SMART arm_5 221 261 IPR000225 GO:0005515
Aip10g00542 578 SMART arm_5 347 391 IPR000225 GO:0005515
Aip10g00542 578 SMART arm_5 305 345 IPR000225 GO:0005515
Aip10g00542 578 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 317 IPR000225 GO:0005515
Aip10g00542 578 SUPERFAMILY ARM repeat 143 541 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00542 Aip-Chr10 5432495 5434539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00542 150 424 U-box Gene Family AT2G23140 24.731 4.65e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00542 - - gmx:100783537 785.023