Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00541 ATGACGAGTTTCGCTTTCTTCCAGCGTCTTTCTAAATCCTTCCAAGACCATCCCTCGCATCTTAAGCTCATACTCCTCTGCACCACCGTAACTGGTGGTGGCCTTTTGGCTTACAGTGATGCTGCTTCTTCTGAAGTGCCGGTTACCGAGAAGAAAAAGGTGGTGGTGCTGGGAACTGGTTGGGCGGGGACTAGCTTCTTGAAGAATCTAAACAATCCGCGATATGAGGTGCAGGTGGTTTCGCCGCGTAACTACTTTGCCTTCACTCCGCTGCTGCCTAGTGTAACGTGCGGAACCGTCGAAGCTCGAAGCATTGTTGAACCCGTTCGCAATATTGCTAAGAAGAAGGAAGTGGACGTTCTATTCAGTGAAGCAGAGTGTGTCAAGATTGATGCTGAAAACAGAAAAATATATTGTCGATCTAATATGAACAATAATTTGAATGGGAAAGAAGAATTTGTCGTGGACTATGACTATCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAATACTCCAGGAGTTGTGGAGAATTGCCATTTCTTGAAGGAGGTTGAAGATGCTCAGAAGATTAGAAGAACTGTTATTGACTGCTTTGAGAGGGCAAATTTACCCAATTTAAGTGAAGAAGAGAAGAAGCGAATTCTTCATTTTGCTATTGTTGGAGGTGGCCCAACTGGGGTAGAGTTTGCCGCCTCACTTCATGACTTTGTCAATGAGGATATGATCAGATTGTATCCGGGAATTAAAGATTTGGTTAAAATTACTCTTCTGGAGGCAGGGGATCATATATTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTTCAAAGAGATGGAATCGATGTGAAAACAGGGTCCATGGTTGTGAAGGTAACTGATAAGGAGATTTCCACTAAAGAACTGAAAAATGGAGGAGAAATTAAGACAATTCCATATGGAATGGCTGTCTGGTCAACTGGCATTGGCACTCGTCCATTTATTAAAGATTTCATGGCACAAATTGGTCAGGCTAGCAGGCGTGCTTTAGCTACTGATGAATGGTTGAGAGTTGAGGGTTGCAACAATGTGTATGCACTCGGTGATTGTGCTACCATCAACCAGCGGAAAGTCATGGAAGATATTGCTGCGATCTTTAAGAAGGCTGACAAAAACAATTCAGGAACACTAACGGTGAAAGAATTTCAAGAGGCCATGAATGACATTTGCGAAAGATACCCTCAGCTGGAGTTGTATCTCAAGAATAACCAAATGCGCGGCATCGCTGATCTGTTGAAGGAAGCCAAAGGAGACGTTAAGAAAGAATCAATTGAACTCAATATCGAGGAACTCAAAACAGCACTCTCCAAAGTGGATTCCCAGATGAAATTTCTTCCGGCTACAGCTCAGGTTGCATCTCAGCAAGGCACTTACCTAGCCAAGTGTTTCAACCGGATGGAAGAGTGTGAAAAGAATCCAGAGGGTCCTCTCAGGTTCAGGGGAGAAGGTCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTGGGTCAATTCGCTCCATTGGGAGGAGAACAGACAGCTGCTCAGCTTCCTGGGGATTGGGTTTCAATTGGCCACAGCAGTCAATGGCTATGGTATTCTGTCTATGCAAGCAAGCAAGTAAGCTGGCGCACAAGGGCCTTGGTAGTTACAGACTGGACAAGACGGTTTATCTTTGGAAGAGACTCAAGTCGCATATAG 1734 0.4429 MTSFAFFQRLSKSFQDHPSHLKLILLCTTVTGGGLLAYSDAASSEVPVTEKKKVVVLGTGWAGTSFLKNLNNPRYEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIAKKKEVDVLFSEAECVKIDAENRKIYCRSNMNNNLNGKEEFVVDYDYLIIAVGANVNTFNTPGVVENCHFLKEVEDAQKIRRTVIDCFERANLPNLSEEEKKRILHFAIVGGGPTGVEFAASLHDFVNEDMIRLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFQRDGIDVKTGSMVVKVTDKEISTKELKNGGEIKTIPYGMAVWSTGIGTRPFIKDFMAQIGQASRRALATDEWLRVEGCNNVYALGDCATINQRKVMEDIAAIFKKADKNNSGTLTVKEFQEAMNDICERYPQLELYLKNNQMRGIADLLKEAKGDVKKESIELNIEELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPLRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFIFGRDSSRI 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00541 577 Coils Coil 439 459 - -
Aip10g00541 577 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Aip10g00541 577 PANTHER NAD(P)H DEHYDROGENASE B2 4 577 - -
Aip10g00541 577 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Aip10g00541 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 378 IPR023753 GO:0016491
Aip10g00541 577 Pfam EF hand 380 406 IPR002048 GO:0005509
Aip10g00541 577 Gene3D - 44 421 - -
Aip10g00541 577 Gene3D - 422 576 - -
Aip10g00541 577 PANTHER NADH DEHYDROGENASE 4 577 IPR045024 GO:0003954|GO:0006116
Aip10g00541 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 54 73 - -
Aip10g00541 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Aip10g00541 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Aip10g00541 577 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Aip10g00541 577 SUPERFAMILY EF-hand 368 464 IPR011992 -
Aip10g00541 577 SUPERFAMILY FAD/NAD(P)-binding domain 218 372 IPR036188 -
Aip10g00541 577 SMART efh_1 379 407 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00541 Aip-Chr10 5398303 5402210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00541 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 74.443 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00541 K03885 - gmx:100802661 1042.34