Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00529 ATGGCGTCTGCTTCGTCGGCTTCTTCGTCAACGTCCAAGCTCTGCTTCAATTATGACTGCAAAGAATTCAAGTCCCAACCACCAAAGAGAGGTTGGACACTCCGTTCCGGAGACCTAGCCGAGCTTTGCGATCGATGCGGTTCTGTTTTTGAAGAAGGGAGATTCTGTGAAATCTTTCACTCAAATGCATCTGGTTGGAGGACTTGTGAGACTTGTAGGAAGCGGGTTCATTGTGGATGTATTGTTTCAAGTCATGCCTTTATGTTGTTGGATCCTGGAGGAATTGAGTGCCTTGCATGTGCCCGCAAACATATGGTTTTGCCATCTAACTCGCCATGGCAACAATCTTTCTCCCTTCAAAATCGTTTACCAGAAAGAATTAGAGACATGTCTGGAAAAAATTGGAGTCAATTAGCTGGATCAGGTCCTGTTCCATGGAAACAAGCACCGAGTTTGTTCAACTCAGTTTCTTCATCTGACTTACATCCAGATGTGCCATCCCTAGTTGAATTGTCTAATAGCATTGACAAAAGGTATGTCATTGAAAGGTTACCTGCCTCGACCATGGAAAAGAAAAATGACGATTTGTCTGGAATATCTGTTAACTGGAGTGTAAAGCTTGGTACCCGGGAAACGATGTTTATGAATGACCTTGCAGGAATAAGGAATGATGACAAACCAAGTTCAGGTTTAAATATGTGCCAGCAGCCTCCATCTCTGAAGGAAGATTCATCTTCTCAACCATTTGGTATGTCTATACCTTATGCATCTGCAAATGAAAGAAATGGTCAAATTGGAGTGACAGGAAGTCATTCACAACAAATACAAACTCCCCCAGGAAAACATTTCAGTGGCCTTATGCAATTAGCGCTTGACTCATCAAGTGAAGCTCTGGTTCGTAATGGACGGCCTCGGGCAGATGCCCGAGGAAGAAACCAGTTATTGCCACGGTACTGGCCCAGGTGTACTGATCTAGAGCTACAACAAATATCTATAGATTCTAATTCAGTAATCACTCCCTTGTTTCAAAAAACCTTGAGTGCCAGTGATGCTGGGAGAATTGGGCGTTTAGTTCTACCAAAAAAGTGTGCCGAGGCCTACTTCCCACCAATTTCTCAGCCTGAAGGATTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTCTGGCCAAACAATAATAGCAGGATGTATGTTTTAGAGGGTGTCACTCCTTGCATACAGTCAATGCAGTTGCAAGCAGGTGACACAGTAACATTTAGTCGATTGGAGCCAGAAGGGAGGTTGGTTATGGGATTTAGAAAGGCTTCAAATGCCACGCCATCTGATCAGGACAATGAAACAAATAAGAATGGAAATGGATTTTCTGCACCTGGTGAAGTTGAGTTAGCTGATCCTAGTTCATGGTCTAAAGTTGATAAATCTGGCTACATAGCAAAAGATGCATTGGGGAGCAAATCTTCAATGCCTAGAAAGAGAAAACTCAACATCTTGGGTTCAAAAAGTAAACGTCTAAAAATTGAAAGTGAGGATATGATAGAGCTGAAGATTACGTGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTCCCAAGTATTGTTGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCGGTGCTTGGAAAGCCTACAATTTTCACAGATGATAATACGGGTGAAAAAGTCCAGTGGGCTCAGTGCGAAGATTGTCTCAAATGGCGTAAATTGCCAGCAAGTGCACTTCTTCAATCAAAATGGACATGTTCAGATAATTCATGGGACCCAGAAAGATCTTCATGTTCGGCTGCTCAAGAGATGACAACAGAAGAGATTGAGAATTTGCTTCCACCTTGTAATTCAGCTGCTTCTAAGAAAATGAAGGCTACTAAGCAGGAATCTGATAATGCTGAAGCTTTGGAGGGACTTGACACACTCGCAAATTTAGCTATTTTGGGAGAGGGTGAGTCACTCCCTACGTCTGCCCAGGCCACGACTAAACACCCGCGTCATAGGCCGGGCTGCTCATGTATTGTTTGCATTCAACCTCCCAGTGGAAAGGGCCCCAAACATAAGCAGTCATGCACATGTAATGTCTGCTTAACGGTGAAGCGTCGATTCCGGACTCTAATGTTACGACGTGAAAAGAAACAATTTGAGAAGGAAGCAGAGACTACACGTAAAAAACAAAAGCAACCGCATTCTCAACCATTACATTCTTCTGAAATTTTTTTTGACGATGATTCCTTGCCTTGTAGTAACCCTGTCGATAGTAGTAGCCCAAATCAAAACAAGGAAGGTAATGAGGTTTCTGACGAAGATCCAAACCAGGTAAAATCATCTACCTCACCTTTTAAAGGCCAAATCGACCTGAATATCCAGCCAGAGCGTGAAGAAGAGTCATCTCCCGGTTCAGATTCCGGTGGCATGATGAAATCGCTCCACAATGCTGTCGAGAGGTGTACGAAACCGACATTGAACAGCGGTATTGGAGATACATCTGGAAGTCAGTCACGTCAGGTTGCGGATGGAGCCGGGGAAGATAAACTTAGCAATGGTGTAGCTCTCGGCAGTAGTAGTCATGGTAGCAAGGAACATGCACAAGCTTTGCCTATGAATATGTGA 2658 0.4372 MASASSASSSTSKLCFNYDCKEFKSQPPKRGWTLRSGDLAELCDRCGSVFEEGRFCEIFHSNASGWRTCETCRKRVHCGCIVSSHAFMLLDPGGIECLACARKHMVLPSNSPWQQSFSLQNRLPERIRDMSGKNWSQLAGSGPVPWKQAPSLFNSVSSSDLHPDVPSLVELSNSIDKRYVIERLPASTMEKKNDDLSGISVNWSVKLGTRETMFMNDLAGIRNDDKPSSGLNMCQQPPSLKEDSSSQPFGMSIPYASANERNGQIGVTGSHSQQIQTPPGKHFSGLMQLALDSSSEALVRNGRPRADARGRNQLLPRYWPRCTDLELQQISIDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASNATPSDQDNETNKNGNGFSAPGEVELADPSSWSKVDKSGYIAKDALGSKSSMPRKRKLNILGSKSKRLKIESEDMIELKITWQEAQGLLRPPPSHVPSIVVIEGFEFEEYEDAPVLGKPTIFTDDNTGEKVQWAQCEDCLKWRKLPASALLQSKWTCSDNSWDPERSSCSAAQEMTTEEIENLLPPCNSAASKKMKATKQESDNAEALEGLDTLANLAILGEGESLPTSAQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQSCTCNVCLTVKRRFRTLMLRREKKQFEKEAETTRKKQKQPHSQPLHSSEIFFDDDSLPCSNPVDSSSPNQNKEGNEVSDEDPNQVKSSTSPFKGQIDLNIQPEREEESSPGSDSGGMMKSLHNAVERCTKPTLNSGIGDTSGSQSRQVADGAGEDKLSNGVALGSSSHGSKEHAQALPMNM 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00529 885 MobiDBLite consensus disorder prediction 221 247 - -
Aip10g00529 885 SMART B3_2 342 443 IPR003340 GO:0003677
Aip10g00529 885 Pfam B3 DNA binding domain 342 441 IPR003340 GO:0003677
Aip10g00529 885 Gene3D - 574 628 - -
Aip10g00529 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 10 819 - -
Aip10g00529 885 SUPERFAMILY DNA-binding pseudobarrel domain 339 441 IPR015300 -
Aip10g00529 885 MobiDBLite consensus disorder prediction 785 800 - -
Aip10g00529 885 Pfam CW-type Zinc Finger 575 617 IPR011124 GO:0008270
Aip10g00529 885 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 819 - -
Aip10g00529 885 MobiDBLite consensus disorder prediction 831 852 - -
Aip10g00529 885 ProSiteProfiles Zinc finger CW-type profile. 570 620 IPR011124 GO:0008270
Aip10g00529 885 MobiDBLite consensus disorder prediction 442 474 - -
Aip10g00529 885 CDD B3_DNA 340 441 IPR003340 GO:0003677
Aip10g00529 885 MobiDBLite consensus disorder prediction 443 461 - -
Aip10g00529 885 MobiDBLite consensus disorder prediction 763 777 - -
Aip10g00529 885 MobiDBLite consensus disorder prediction 228 247 - -
Aip10g00529 885 Gene3D - 320 446 IPR015300 -
Aip10g00529 885 Coils Coil 631 651 - -
Aip10g00529 885 ProSiteProfiles B3 DNA-binding domain profile. 342 443 IPR003340 GO:0003677
Aip10g00529 885 MobiDBLite consensus disorder prediction 729 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00529 Aip-Chr10 5265799 5272415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00529 299 728 B3 DNA Binding Superfamily AT4G32010 59.633 4.37e-168 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip10g00529 B3 9.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00529 - - gmx:100782114 1474.14