Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00490 ATGGATTCATGTCAACCCCAACTCCCACCGGGATTCAGGTTCCACCCAACCGACGAAGAACTCATCGTTCACTACCTCAAGAGAAAAGCTTCCTCTGCTCCTCTCCCCGTCGCCATCATCGCCGACGTTGATCTCTACAAGTTCGACCCATGGGAGCTTCCAAGTAAGGCCACGTTTGGGGAGCAAGAATGGTATTTCTTTAGTCCGAGGGATCGCAAGTATCCGAATGGGGCTCGCCCAAACAGAGCAGCTACGTCCGGATATTGGAAGGCCACCGGCACTGATAAGCCTATTATTGCGTCTGATGGCCAACACCGACTCGGCGTCAAGAAAGCTCTCGTCTTCTATGGTGGCAAGCCTCCTAAAGGGGTTAAAACCAATTGGATCATGCACGAATATAGACTCACTACTACTCATAACAACAATTCTATCTCATCATCAAAGTCTTTTCCTTCTCTTCCTTCTCATCTTCCTTCCGCCAATAACAAGAAGAATTCCTTGAGGCTTGATGATTGGGTGTTGTGCCGAATATATGAAAAAAGCAACCGTGGCAATTTTGCAAGAACAGCGTTGATGGAGCACCATGATCATGATGATGATGATGATGACAATAAGGATCAGCTTTCCGCGGAAACAACGAGTATGATAGAAAACATGTCCACGATGAGTAGTCAGAATTCCAAGCCCACACAACATTATGGACCATTGCTGGTTCAAAACGATGACAACTTCTTCGATGGAATCTTAGCTGCTGATCATCATAATCAACAACACAACTTGCCAATGAAGAGGACACTGGTGAATATGAATAATTCACAGTTTTGGAATGAGACAAACAAGAGGTTCCATTGTGATCTCAATAACAACACTAACATTGTTGCTAATAATGATGAGGATAACACTTCCTTTGTTTCACTGCTTAGCCATAATCAGATTCCTCATCATCCTACTAACAATGCTTCTCTTCTTGACCCTACTGTTGCTGATGGTGTTTTCAGGCAACACTTTCAACTTCAAGCAATTAATTGGAACTTATAG 1038 0.4393 MDSCQPQLPPGFRFHPTDEELIVHYLKRKASSAPLPVAIIADVDLYKFDPWELPSKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIIASDGQHRLGVKKALVFYGGKPPKGVKTNWIMHEYRLTTTHNNNSISSSKSFPSLPSHLPSANNKKNSLRLDDWVLCRIYEKSNRGNFARTALMEHHDHDDDDDDNKDQLSAETTSMIENMSTMSSQNSKPTQHYGPLLVQNDDNFFDGILAADHHNQQHNLPMKRTLVNMNNSQFWNETNKRFHCDLNNNTNIVANNDEDNTSFVSLLSHNQIPHHPTNNASLLDPTVADGVFRQHFQLQAINWNL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00490 345 MobiDBLite consensus disorder prediction 143 162 - -
Aip10g00490 345 SUPERFAMILY NAC domain 5 180 IPR036093 GO:0003677|GO:0006355
Aip10g00490 345 PANTHER NAC TRANSCRIPTION FACTOR 56 5 318 - -
Aip10g00490 345 ProSiteProfiles NAC domain profile. 8 180 IPR003441 GO:0003677|GO:0006355
Aip10g00490 345 PANTHER NAC TRANSCRIPTION FACTOR 56-LIKE 5 318 - -
Aip10g00490 345 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Aip10g00490 345 Gene3D NAC domain 17 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00490 Aip-Chr10 4890806 4892678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00490 5 344 NAC Transcription Factor Family AT1G61110 50.143 5.37e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g00490 NAM 2.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00490 - - aip:107624204 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03740 03 119569467 119571408 Aip10g00490 10 4890806 4892678 PCT