Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00473 ATGTCTGACATCGAAAATCATGCTTCCCTTCGTGGCCGTTCATCGCCCGATAAGCCAATTTCTCGTGGATCTGCTCATGAAAGTTCACGGATGAGAAGGCAAGATGATGAAAGGAAAACCTTTCATGACCGCCATCGCAGAGACCACAAGGTTGGAAGGTTTATGGGGAGGGGTAAATATGACAATTATAATCGGCACAAGAAAAGTGATTATGATAGGCATAATGACCGTGTTTACGATGGAGAAACAAAGCACAAATATGGAGCACATTTAAAGAGATCAAGGAGGAAATCAAGATCAAGATCAAGATCACGATCCAGATCCCCATCTCGGTCTGAATGCAAAAGGACCTCTGGTTTTGACATGGCACCACCTACTGCAGACGTAACACCTGCTGTCTCAGGGCAAATACTGGGTACTGCTCATACGATTCAAGGAACTTCACAAAATTTGTCACCATTTGGAATATCACAGGTGCTGGTTTGTCATCAGTGTTATGGCACCATATTTTTAGCTTTTTTAAATCCTATGAACAATCTATATGATTTCATTTTGCCACAGATGGGAACACTTTCTACAATTGCAGCATTCTTCAGCCAAGTCATGATTACCATTGGGGGCAATTCTGCTGGAGCAGGCGATTCTGTTGTCAATGTCTACATCAATCATGAGAAGAAATTCGCATTTGTGGAGATGAGAACTGTTGAGGAGGCTAGCAATGCAATGGCGTTAGATGGAATAATATTTCAGGCAAGGACTATCATGGTCCGTAGGCCAACAGATTATAATCCTTCATTAGCTGCTGCTCTAGGTCCTAGCCAGCCAAGTCCACACCTCAACTTATCTGCCGTTGGACTTGCTATTGGTGCTGTTGGTGGAACTGAGGGACTTGACCGCATTTTTGTGGGTGGGCTTTCATATTGCTTCACTGAAGAACAAATAAGACAATTACTAGAATCTTTTGGTACTCTCCATGCTTTTGATTTAGTTAGGGATAAAGACACTGGACATTCTAAAGGATATGGTTTTTGTACTTATGAGAATCCAGCGGTAACAGACATTGCTTGTGCCTCTCTCAATGGCCTTAAAATGGGTGATAAAACATTGACTGTAAGGCGAGCTACTGTCAGTGGTCATTCTAAAACAGAGCAGGAACACATCTTTGCAAGGGCACAACAGCATATAGCTATCCAGAAAATAGCTTTGGAAGTTGGCGGGTCAAATATTCCTTGGGCAGAAAGAGTGCCAACTACAATTGATGAAACTCCCACTAAAGTGTTATGTTTGACAGAGGCTGTTACTTCTGATCAGTTGAGGGATGATGAGGAATATGAAGAAATATTGGAAGACATGCGGGATGAGTGCCGCAAATTTGGAGCTTTGGTGAATGTTGTTATTCCGCGGCCGAATCCTGGCGGAGAGCTGCCTCCGGGTATTGGAAAGGTGTTCTTGGAATACTCTGATAACGCTGGTTGTTCCGCCGCAAAAAATGCTCTACATGGTAGGAAATTTGGTGGCAATGTTGTGACTGCCGTTTATTATTCTGAAGAGAAGTATCACGGTATGGACTATGGACTGAATTTTTTTATCTCGCTATCTATCACAATCTCAATCTCATTCTCCATCTGCACCAATCTGCATTGCTGCTTTTGCTAA 1656 0.4275 MSDIENHASLRGRSSPDKPISRGSAHESSRMRRQDDERKTFHDRHRRDHKVGRFMGRGKYDNYNRHKKSDYDRHNDRVYDGETKHKYGAHLKRSRRKSRSRSRSRSRSPSRSECKRTSGFDMAPPTADVTPAVSGQILGTAHTIQGTSQNLSPFGISQVLVCHQCYGTIFLAFLNPMNNLYDFILPQMGTLSTIAAFFSQVMITIGGNSAGAGDSVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFQARTIMVRRPTDYNPSLAAALGPSQPSPHLNLSAVGLAIGAVGGTEGLDRIFVGGLSYCFTEEQIRQLLESFGTLHAFDLVRDKDTGHSKGYGFCTYENPAVTDIACASLNGLKMGDKTLTVRRATVSGHSKTEQEHIFARAQQHIAIQKIALEVGGSNIPWAERVPTTIDETPTKVLCLTEAVTSDQLRDDEEYEEILEDMRDECRKFGALVNVVIPRPNPGGELPPGIGKVFLEYSDNAGCSAAKNALHGRKFGGNVVTAVYYSEEKYHGMDYGLNFFISLSITISISFSICTNLHCCFC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00473 551 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 376 IPR000504 GO:0003723
Aip10g00473 551 Gene3D - 184 274 IPR012677 -
Aip10g00473 551 SUPERFAMILY RNA-binding domain, RBD 215 263 IPR035979 GO:0003676
Aip10g00473 551 CDD RRM3_U2AF65 424 512 - -
Aip10g00473 551 SMART rrm1_1 299 372 IPR000504 GO:0003723
Aip10g00473 551 SMART rrm1_1 426 512 IPR000504 GO:0003723
Aip10g00473 551 SMART rrm1_1 168 257 IPR000504 GO:0003723
Aip10g00473 551 MobiDBLite consensus disorder prediction 23 43 - -
Aip10g00473 551 Gene3D - 293 394 IPR012677 -
Aip10g00473 551 Gene3D - 420 524 IPR012677 -
Aip10g00473 551 TIGRFAM U2AF_lg: U2 snRNP auxilliary factor, large subunit, splicing factor 22 524 IPR006529 GO:0003723|GO:0005634|GO:0006397
Aip10g00473 551 MobiDBLite consensus disorder prediction 54 87 - -
Aip10g00473 551 MobiDBLite consensus disorder prediction 1 127 - -
Aip10g00473 551 MobiDBLite consensus disorder prediction 88 105 - -
Aip10g00473 551 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 369 IPR000504 GO:0003723
Aip10g00473 551 CDD RRM2_U2AF65 298 374 - -
Aip10g00473 551 PANTHER RNA-BINDING PROTEIN 1 525 - -
Aip10g00473 551 SUPERFAMILY RNA-binding domain, RBD 299 517 IPR035979 GO:0003676
Aip10g00473 551 SMART rrm2_1 427 512 IPR003954 GO:0003676
Aip10g00473 551 SMART rrm2_1 299 372 IPR003954 GO:0003676
Aip10g00473 551 PANTHER U2 SNRNP AUXILIARY FACTOR LARGE SUBUNIT 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00473 Aip-Chr10 4720154 4729449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00473 300 440 Eukaryotic Initiation Factors Gene Family AT1G49760 27.660 1.23e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00473 K12837 - vvi:100243034 604.364