Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00470 ATGACACCACGCACTTTCAAGAGGGTTGCTTGCAATTATCCACACGAGAACATAACATTCAAGATAGATGAGAGTAGTAGCAACCCTAATTACTTGGAATTTGTGATTTGGTATCAACAGGGAATTAGAGACATAACTGCTGTCCAGCTTTGTGAGACTGAGAATTTTGAGTACAAGTTGCTAGATCGGAGCCATGGTGCAGTGTGGAGTAGCACCTGCGGCATTGATGGCATTGATTAG 240 0.4292 MTPRTFKRVACNYPHENITFKIDESSSNPNYLEFVIWYQQGIRDITAVQLCETENFEYKLLDRSHGAVWSSTCGIDGID 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00470 79 Pfam Expansin C-terminal domain 18 72 IPR007117 -
Aip10g00470 79 Gene3D - 10 76 IPR036749 -
Aip10g00470 79 PANTHER EXPANSIN-B3 6 73 - -
Aip10g00470 79 PANTHER EXPANSIN-LIKE B1 6 73 - -
Aip10g00470 79 SUPERFAMILY PHL pollen allergen 17 73 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00470 Aip-Chr10 4681135 4683323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00470 6 69 Expansin Gene Family AT4G38400 35.938 2.50e-13 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00470 - - ccaj:109799868 113.62