Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00459 ATGAAACGACGTCGTTTCACGCTCACTACGTCCCTCCCTCAACGTTTCCATAACGTTTTGTCTCCCTCCTCTCTACACACAAAACAAACACAACACAGAGTGTGGTTTCTTCTTCTCCCTCCGTCAATCTCCAATGACGCATGTGCTCCTCCATTAACCAGACCGATTTCAGTGGAAGACGTTGGCTCTGGAGCATCGTTGCTTTCCTCTCCTTCATACACAAAGTTGGGCAGCCTTGTTTCTCTGAAAGAGGGCCTTATAAATGCAGTTAAGGAGGTTTTTCCAGATGTCCATCACAGATTCTGTGTTTGGCATCTGTGGAAGAACTTAAATAAGCAATGGAAGGATCTCCAGCTTAGAGGGCTACTTTGGAATTGTGCAAGATGTACTAGCCAAGATGGCTTCCTTGATATCATAAAAAAGATTGAAAGGGTTAATAAAGAAGCCTGGGAGTATTTGAACAAGTGGCcctatgcaagAGTTTTCTCCCTTCCACTCCCACTGCCAAAGCTGTTCCCTTTTTTCATCTGGATCTCTTTACTTGGTGACCAAATTCTTGAGAAGGGTTCTTTGGTTATGGCAATAGATCACTACTTCTCCAAGGAATGGAAAACCATCCCAAATTCGGCGACCGAGACAGAAAGCTGCAATGGCTGTTTTGATTGCAACATCTGCTTAGATTTCGCGCGAGAACCAGTAGTGACTTTATGTGGCCATCTTTACTGCTGGCCTTGCATCTACAAGTGGCTCCATGTCCAAAGTGATTCTCTAGCACCTGATGAGCCACCACAATGTCCTGTTTGCAAGGCTGATATATCCCACACCACAATGGTTCCTCTCTACGGCCGTGGCCAGGCTCCGTCTGATAGGAAGGCGTTGTCTCGTGATTTTTTCGTGCCCCCAAGGCCGCCTGCTTCCAGTGCTCAGTCTCTATTGACTGCAAATTCTCAGAGTGGACAACAGCTCCCATATCGAAATCCTTATCAGGGTCGGTATTTAAGCCCTGAGGAGGAAGATGCTGCCACTTCGCAGCTGCTCAATGGTGCTAGCATGAATCCAGGACCCCAACACCCTTCTTTGGTTGGAATGTTTGGGGAGATGTTTTATGCTAGAGTGTTTGGCAACTCGGAAAACTTGTATGCATACCCAAATTCTTATCAACCCATGACAAGTAATAATTCCAGATTGAGAAGGCAAGAGATGGAGGCAGATAAATGCTTGAACAGAATCTCAATTTTTCTCTTTTGTTGCTTCCTTCTGTGTCTCATTGTCTTCTGA 1278 0.4523 MKRRRFTLTTSLPQRFHNVLSPSSLHTKQTQHRVWFLLLPPSISNDACAPPLTRPISVEDVGSGASLLSSPSYTKLGSLVSLKEGLINAVKEVFPDVHHRFCVWHLWKNLNKQWKDLQLRGLLWNCARCTSQDGFLDIIKKIERVNKEAWEYLNKWPYARVFSLPLPLPKLFPFFIWISLLGDQILEKGSLVMAIDHYFSKEWKTIPNSATETESCNGCFDCNICLDFAREPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEPPQCPVCKADISHTTMVPLYGRGQAPSDRKALSRDFFVPPRPPASSAQSLLTANSQSGQQLPYRNPYQGRYLSPEEEDAATSQLLNGASMNPGPQHPSLVGMFGEMFYARVFGNSENLYAYPNSYQPMTSNNSRLRRQEMEADKCLNRISIFLFCCFLLCLIVF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00459 425 ProSiteProfiles Zinc finger RING-type profile. 222 269 IPR001841 -
Aip10g00459 425 SMART ring_2 222 268 IPR001841 -
Aip10g00459 425 SUPERFAMILY RING/U-box 218 281 - -
Aip10g00459 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 194 425 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aip10g00459 425 Pfam Zinc finger, C3HC4 type (RING finger) 222 268 IPR018957 GO:0046872
Aip10g00459 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 310 IPR013083 -
Aip10g00459 425 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Aip10g00459 425 MobiDBLite consensus disorder prediction 295 329 - -
Aip10g00459 425 CDD RING-HC_AtRMA_like 220 270 - -
Aip10g00459 425 MobiDBLite consensus disorder prediction 306 327 - -
Aip10g00459 425 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 194 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00459 Aip-Chr10 4552260 4560656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00459 205 411 C3H Transcription Factor Family AT4G27470 41.743 4.50e-41 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00459 K10666 - gmx:100816864 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g03784 03 120140671 120152631 Aip10g00459 10 4552260 4560656 PCT