Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00437 ATGGATTTTAATTGGGACGCTGAGCACATATTTCGACTGTATGTGCATGATTATATGGTGAAAAGAGGAATGCACAAAACCGCTGAGATTTTCAGGAAGGAATGCAATCTGACTGACACTGCTGTTACACTTGATTCTCATGATGGGTTCTTGCTCGAATGGTGGTCTGTTTTCTATGAGATATATATGTCTAGGGCTAGACTAGCGAAGGATCAGGCGACTGGGGCAGAATCTTCTGGGAAGGTCCCAGGAACTACATGTAATGCCGGAATTAGTGTCCCTCCAATCCCTCGATCATCCATGAGTGAGCAGAGACCTGACCAACGTCAAGTCAACGCCAGATATAACAGGATGATGGCACAACCAGCTGCATGTGTACTACAATCTACTCTGAATGCAAAAGAGCATCCTGGATATATGACTGTAGATGCCGCCAGAGCAAACAATTTGAAGCTGGCTGTGACCAATTCAAATAATTCGCTGCAAGATGTAGGGAATAATGCTCAGAGGGAAGCTTTTAAGGATATTTGCATCGGAAGGGACGTATCTAGGGACCCTCTAGATGTAGCCCAAAGGACATTGCAACATAAACCAAATACTGGTGAATCTTTCAATCGAATGCCAATTAACGGTTGGCCAGTAAATAACCAATGCAACAATCATCACACAAAGGTTTCCGAGGCTGAATTAAGCATAAAGGATAAGCAGACAATGGACCCAATGATTAGGGATCAGCAACCACAGATGCAGTCTCAGAATGTTGAGGTTGTACCCGTTCCTCATCAGAAGAGCAAAAAGAGAAAGGCAACGATACCCTTGAGGACTGGAGAAAGTGCCATGGATTGTGTAGATGCAGAAGATGGAAAGCCTATGGATGAAAGTGTGGAGTCTTTCCTGTCATTCGAAAATGAACATGCTGATCATAGAGTTGTGCCTTTCAGCAATCTGACTCGTATTTCAGCTGCACATGGTAAAAATGAAAATAAAGGTTTTTCATTTGAAGAAGTCAGTTGCCTTCACTCAAGCAAAAACAAGGTTTTATCCACCCATTTTTCATGGGATGGAAAGGTTTTGGCAAGTGCTGGACATGAGAAGAAGGTTTTCATTTGGAACATGGAAACCCTTAATTGTGTTACTACTACAGAAGGACATTCACATCTCATTACAGATGTTCGGTTTAGGCCAAGTTCTACTATATTTGCAACATCTTCCTTTGACCGATCTATAAAACTTTGGGATGCAGCCAGACCCGACAAGTCATTATTCCAACTCGACGGTCATGCCGACCAAGTAATGTCATTGGACTTCCATCCAAGGAAGCCTGCCATTCTTTGTTCATGTGATAGCAATGACATAATTCGTCTGTGGGATATCAATCAGCGTACCTGCTTGCATACTACTAAGGGAGGCGCTAATAAACAAGTCAGGTTCCAGCCTCGTACTGGGAAGTTTCTGGCTGCTGTGTCCGGAAATAATATCAAGATAGTTGATTTTGAGAGCAATAGATTTCTGTACCACCTAAAGGGTCATGTCAAAGATGTTCTTTCCATTTGTTGGGACATGAGTGGAAACTATGTTGCCTCCGTCAGTGAAGATTGTGCACGTGTCTGGTCTGTTGCAGATGGAAAATGTATAAGTGAATTGAATTCCACTGGGAACAAGTTCCAATCGTGTGTATTTCATCCAGGATATCATAATCTCTTAGTAATTGGTGGCTATGAGTCCCTGGAATTGTGGTGTACAACAGAGAGCAGTAAAACATTGACAGTTCCTGCACACAAGGGACTAATTGCTGGACTAGCACATTCACCCCAAGATGAAATGATTGCCTCAGCTAGCCATGATCATTGCGTGAAACTCTGGAAATAA 1869 0.427 MDFNWDAEHIFRLYVHDYMVKRGMHKTAEIFRKECNLTDTAVTLDSHDGFLLEWWSVFYEIYMSRARLAKDQATGAESSGKVPGTTCNAGISVPPIPRSSMSEQRPDQRQVNARYNRMMAQPAACVLQSTLNAKEHPGYMTVDAARANNLKLAVTNSNNSLQDVGNNAQREAFKDICIGRDVSRDPLDVAQRTLQHKPNTGESFNRMPINGWPVNNQCNNHHTKVSEAELSIKDKQTMDPMIRDQQPQMQSQNVEVVPVPHQKSKKRKATIPLRTGESAMDCVDAEDGKPMDESVESFLSFENEHADHRVVPFSNLTRISAAHGKNENKGFSFEEVSCLHSSKNKVLSTHFSWDGKVLASAGHEKKVFIWNMETLNCVTTTEGHSHLITDVRFRPSSTIFATSSFDRSIKLWDAARPDKSLFQLDGHADQVMSLDFHPRKPAILCSCDSNDIIRLWDINQRTCLHTTKGGANKQVRFQPRTGKFLAAVSGNNIKIVDFESNRFLYHLKGHVKDVLSICWDMSGNYVASVSEDCARVWSVADGKCISELNSTGNKFQSCVFHPGYHNLLVIGGYESLELWCTTESSKTLTVPAHKGLIAGLAHSPQDEMIASASHDHCVKLWK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00437 622 Gene3D - 315 473 IPR015943 GO:0005515
Aip10g00437 622 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 39 IPR006594 GO:0005515
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 381 413 - -
Aip10g00437 622 MobiDBLite consensus disorder prediction 245 268 - -
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 622 IPR001680 GO:0005515
Aip10g00437 622 ProSitePatterns Trp-Asp (WD) repeats signature. 444 458 IPR019775 -
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 380 IPR001680 GO:0005515
Aip10g00437 622 CDD WD40 341 622 - -
Aip10g00437 622 MobiDBLite consensus disorder prediction 78 108 - -
Aip10g00437 622 Pfam LisH 14 34 IPR006594 GO:0005515
Aip10g00437 622 Gene3D - 474 622 IPR015943 GO:0005515
Aip10g00437 622 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 5 622 IPR044716 GO:0003714
Aip10g00437 622 MobiDBLite consensus disorder prediction 76 108 - -
Aip10g00437 622 SUPERFAMILY WD40 repeat-like 333 622 IPR036322 GO:0005515
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 424 459 - -
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 424 466 IPR001680 GO:0005515
Aip10g00437 622 Pfam WD domain, G-beta repeat 503 537 IPR001680 GO:0005515
Aip10g00437 622 Pfam WD domain, G-beta repeat 588 622 IPR001680 GO:0005515
Aip10g00437 622 Pfam WD domain, G-beta repeat 376 413 IPR001680 GO:0005515
Aip10g00437 622 Pfam WD domain, G-beta repeat 421 457 IPR001680 GO:0005515
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 590 622 - -
Aip10g00437 622 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 413 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 332 371 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 581 622 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 417 457 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 541 580 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 460 497 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 374 413 IPR001680 GO:0005515
Aip10g00437 622 SMART WD40_4 500 538 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00437 Aip-Chr10 4319311 4324094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00437 356 621 Miscellaneous Gene Families AT5G08390 25.000 5.01e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Aip10g00437 WD40 0.0026 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00437 - - gmx:100783354 757.288