Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00436 ATGGCTTCTATCACTTCTTCCCTCTCCTCTCTCTCCCTCCACTCTCACACATCTTCTACTGCTGCTTCTTCACGTTTCTCTCTCCTGCCCGCTTCCAAACTCACCTTCAATTTCGCCGCCGCACGCCCCCGCACACTAACCCTCGCCGCCGCAAAATCCAAGCCCTCCGATGACATCGACACCTCGTTCTTCGACAACGTGAACCCAGAAGAGGAGGTCCCCTTCAACCCCCCAGAGGCCCCGGAAGGGTTCGTGGCCCCACCTTCGTTCGACGAAGGGCCAATGGAAACGGAAGACGAAATAGCCGCCGCATACGAAGAATTGTACGGACCGGCGTACAGTGGCGTGAGCGTTCTGGGAAACGACATATACGTGATGGACTCGAAGATGAAGAAGGATACTGGGTTCGGGTCGAAGGCGAAGAAGGAGAAGGTGAAGGATGGGTTCGAGGAGAGGGTGGTGCAGGTGAGGAGGGTGACGAAGGTGGTTAAGGGAGGAAAGCAGCTGAGGTTCAGGGCGGTGGTGGTGGTCGGAGACAAGAAGGGGAATGTGGGTGTGGGTGTTGGAAAGGCCAAAGAGGTCATTGCTGCTGTTCAGAAGTCTGCTGTTAATGCAAGGAGGAATATCATCACTGTTCCTTTGACTAAGTACTTGACTTTTCCACACAGAGCTGATGGAGATTATGGAGCAGCCAAGGTGATGCTGAGGCCTGCATCACCGGGTACCGGAGTGATTGCTGGTGGGGCGGTGAGGATTGTTCTTGAGATGGCCGGAGTTGAGAATGCTCTGGGAAAGCAACTCGGCAGCAACAATGCACTCAACAATGCCAGGGCAACTGTTGCTGCTGTTCAGAAAATGAAGCAGTTCCGTGAGGTTGCCCAAGAGCGTGGCATTCCAATGGAACAACTCTGGCAATGA 918 0.5436 MASITSSLSSLSLHSHTSSTAASSRFSLLPASKLTFNFAAARPRTLTLAAAKSKPSDDIDTSFFDNVNPEEEVPFNPPEAPEGFVAPPSFDEGPMETEDEIAAAYEELYGPAYSGVSVLGNDIYVMDSKMKKDTGFGSKAKKEKVKDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGNVGVGVGKAKEVIAAVQKSAVNARRNIITVPLTKYLTFPHRADGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVAAVQKMKQFREVAQERGIPMEQLWQ 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00436 305 PANTHER RIBOSOMAL S SUBUNIT 5 305 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip10g00436 305 Gene3D - 139 210 - -
Aip10g00436 305 ProSiteProfiles S5 double stranded RNA-binding domain profile. 149 212 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip10g00436 305 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 5 305 - -
Aip10g00436 305 TIGRFAM rpsE_bact: ribosomal protein uS5 147 301 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aip10g00436 305 ProSitePatterns Ribosomal protein S5 signature. 166 198 IPR018192 -
Aip10g00436 305 Gene3D - 216 304 IPR014721 -
Aip10g00436 305 Pfam Ribosomal protein S5, C-terminal domain 226 296 IPR005324 GO:0003735|GO:0005840|GO:0006412
Aip10g00436 305 SUPERFAMILY Ribosomal protein S5 domain 2-like 219 297 IPR020568 -
Aip10g00436 305 Pfam Ribosomal protein S5, N-terminal domain 149 213 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aip10g00436 305 Hamap 30S ribosomal protein S5 [rpsE]. 130 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Aip10g00436 305 SUPERFAMILY dsRNA-binding domain-like 146 214 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00436 149 289 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.544 7.33e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00436 K02988 - gmx:100787105 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00436 10 4317747 4319123 Aip10g00436 10 4317747 4319123 ECH