Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00428 ATGGGAGATAGTAGTTGGGGCGAGAGAAAGAGCATGAAGTACAATGAAGAAGAAGAGGAAGATGAAGAATACCAAGACGAAGATGAAGGAAAAAAGAAGAGAGTAGTAGTGGTGAGCAGCAACAAGAGAGCATCATCATCATCATCATGTAATTGTCAAGTGGATGGTTGCAATGCAGATCTAAGCATTGCAAAGCAGTATCACAAGCGCCATAAGGTGTGTGAGTACCATGCTAAGGCTCACTCGGTTCTCATCTCTCAACAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTAGCTGGACACAATGAGAGGCGTCGCAAAAATTCATCAGATTGCCAAGGATAA 399 0.4286 MGDSSWGERKSMKYNEEEEEDEEYQDEDEGKKKRVVVVSSNKRASSSSSCNCQVDGCNADLSIAKQYHKRHKVCEYHAKAHSVLISQQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNSSDCQG 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00428 132 Pfam SBP domain 52 125 IPR004333 GO:0003677
Aip10g00428 132 MobiDBLite consensus disorder prediction 1 32 - -
Aip10g00428 132 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 4 126 IPR044817 GO:0003677
Aip10g00428 132 Gene3D - 42 113 IPR036893 GO:0003677|GO:0005634
Aip10g00428 132 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Aip10g00428 132 SUPERFAMILY SBT domain 51 129 IPR036893 GO:0003677|GO:0005634
Aip10g00428 132 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 4 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00428 Aip-Chr10 4231387 4232909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00428 45 129 SBP-box Gene Family AT2G33810 74.118 5.30e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Aip10g00428 SBP 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00428 - - adu:107468295 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00428 10 4231387 4232909 Aip10g00428 10 4231387 4232909 ECH
Aip10g00428 10 4231387 4232909 Aip03g03805 03 120412750 120414482 ECH
Aip08g01478 08 24796655 24797858 Aip10g00428 10 4231387 4232909 ECH
Aip08g00936 08 10854096 10855075 Aip10g00428 10 4231387 4232909 ECH
Aip03g03805 03 120412750 120414482 Aip10g00428 10 4231387 4232909 PCT