Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00401 ATGGCATGGTGCAATGACACTCATGAGAAAGAGATAATTGCTTCCAATAATAGTACTATTACTCTTAGACCTAAATCCGACCCAAACGTAACTTGCCCCTCATGTGGCCATAACATTCAAATAATCCAAGAGCAGGGTGGAATTCATGAGTTGCCGGGGTTACCAGCTGGAGTGAAGTTTGACCCAAATGACATTGAAATATTGGAGCATTTGGAGGCAAAAGTTATGTCTCATGTGCCCAACCTTCATCCTCTCATTGATGAGTTCATACCAACACTTCAAGACGAGAATGGCATCTGTTATACACACCCAGAGAAGCTACCAGGAGTAAAGAAAGATGGGCAGATCCGGCACTTCTTCCACAGGCCTTCAAAAGCATACACAACAGGAACAAGGAAGAGAAGAAAGGTTCACACCGATGAAGATGGAAGCGAAACAAGGTGGCACAAAACCGGAAAAACAAGACCGGTGGTGGCCGGCGGCGGCCTAGTGAAGGGTTTCAAGAAGATTCTAGTACTATACACCAACTATGGGAGGCAAAAAAAGCCTGAGAAAACTAACTGGGTGATGCATCAATACCATCTTGGAAGCAATGAAGAAGAGAGAGATGGAGAACTAGTAGTTTCAAAAGTGTTCTACCAAACACAACCTAGACAATGCGGCAATTCCATTGTTATAAAGGAAGATAATGATGATGATCTTCCCTATGGAAAGATATTGATGATGAATAACAGTAGTAAGAAGCACAAAAATAATAACGATAGAAATGTTGCTGCTCCTGTTGTGGACTACTACATCAACTATGACCATGTTGATCATCATAATCACAATCATAATAGTCAAAGATGTTCATCACCTACTCAACTTATTCCAAACTTGGTTCTCCAAGGTGATTCCTCTTCTCTTTTTCGCTTTGCTTCATCATCACTCGATGGGAATACCAACAAAACAAGACTTTTTGAGAGAAAGTTGTAG 975 0.4123 MAWCNDTHEKEIIASNNSTITLRPKSDPNVTCPSCGHNIQIIQEQGGIHELPGLPAGVKFDPNDIEILEHLEAKVMSHVPNLHPLIDEFIPTLQDENGICYTHPEKLPGVKKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVVAGGGLVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEERDGELVVSKVFYQTQPRQCGNSIVIKEDNDDDLPYGKILMMNNSSKKHKNNNDRNVAAPVVDYYINYDHVDHHNHNHNSQRCSSPTQLIPNLVLQGDSSSLFRFASSSLDGNTNKTRLFERKL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00401 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 300 IPR044799 GO:0003700
Aip10g00401 324 Pfam No apical meristem (NAM) protein 55 195 IPR003441 GO:0003677|GO:0006355
Aip10g00401 324 Gene3D NAC domain 64 218 IPR036093 GO:0003677|GO:0006355
Aip10g00401 324 ProSiteProfiles NAC domain profile. 54 214 IPR003441 GO:0003677|GO:0006355
Aip10g00401 324 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 300 - -
Aip10g00401 324 MobiDBLite consensus disorder prediction 133 148 - -
Aip10g00401 324 SUPERFAMILY NAC domain 49 214 IPR036093 GO:0003677|GO:0006355
Aip10g00401 324 MobiDBLite consensus disorder prediction 127 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00401 Aip-Chr10 4026094 4028463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00401 1 236 NAC Transcription Factor Family AT4G28500 68.443 6.12e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip10g00401 NAM 3.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00401 - - gmx:100795920 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00401 10 4026094 4028463 Aip10g00401 10 4026094 4028463 ECH
Aip10g00401 10 4026094 4028463 Aip03g03829 03 120738162 120741791 ECH