Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00398 ATGGAGATGAAACAAATGCAGAGTGCTGAAGAGTTGTTTCAAGCTCAATCCCATTTATACAGCTATACATACCATTTCATTGGGTCTATGTGCCTCAAAAGTGCAGTTCATTTGGGAATACCAGACATAATCCACAAGCATGGTCAACCCATTACACTTAATGAGTTGGTCTTGGCACTTCAAATTGACCCTAACAAATCCGGATATGTGTATAGGCTCATGCGGTTCTTGGTGCATTCTGGATTCTTTGTTACAACCAAGATTGATGGTGGAAAAGAAGAAGAAGAAGAAGAAGAAATAATGGGGTATGATCTTACACCTTCCTCAAGGCTCCTCCTCAAAGACACTGTCCCAACTCTCTCTCCTTTTGTTCAAGCAATGTTTCATCCTGCTATACTTCACTCTCCTGAGTTCTTGGCAGAATGGTTCCACACAAATGAGCCTACACCCTTTCACACTGCACATGGCAAAAGCTATTGGGACTATTTAAGCCAAAACCAAGAGTTTAATGGCCTCTTCAATGAAGCAATGATCAGTGATTCTGGAATGATGAATTTGGTGATCAAAGATTGCAAGCCTGTTTTTGAGGGGCTGAGTTTATTGGTTGATGTTGGTGGCGGAAAAGGCGCCGTGGCTAGGTTGCTTTCTGAATCTCTGCCTCATTTGCAATGCATAGTACTTGATCTTCCACACGTTGTTGAAACTTCACAAGATTGCAATAACTTGAAATTTGTTGGGGGTGACATGTTTCAGTCTATTCCTTCAGCTGATGCTATTCTTCTTAAGTTAGTTTTGCATGCTTATAGTGATGAAGATTGCGTTAAGGTACTGAAGAAGTGTAGAGAAGCTATTTCAAGCAAAGGTAAGGAAGGGAAAGTAATAATCATAGACATAGTGATCAATGAGAAGAATGATAAGCGTGAATTGACAGAATCAAAGCTCCTCTTTGATCTGCTAATGATGAGTGTGGTCACTGGAAAAGAGAGGGAAGAAAAAGAATGGAAGAAGCTCTTCTTGGAAGCTGGATTCAGTCACTATAAGATAACACCCATATTTGGTATGAGGTCACTCATCGAAGTTTATCCTTGA 1089 0.404 MEMKQMQSAEELFQAQSHLYSYTYHFIGSMCLKSAVHLGIPDIIHKHGQPITLNELVLALQIDPNKSGYVYRLMRFLVHSGFFVTTKIDGGKEEEEEEEIMGYDLTPSSRLLLKDTVPTLSPFVQAMFHPAILHSPEFLAEWFHTNEPTPFHTAHGKSYWDYLSQNQEFNGLFNEAMISDSGMMNLVIKDCKPVFEGLSLLVDVGGGKGAVARLLSESLPHLQCIVLDLPHVVETSQDCNNLKFVGGDMFQSIPSADAILLKLVLHAYSDEDCVKVLKKCREAISSKGKEGKVIIIDIVINEKNDKRELTESKLLFDLLMMSVVTGKEREEKEWKKLFLEAGFSHYKITPIFGMRSLIEVYP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00398 362 SUPERFAMILY "Winged helix" DNA-binding domain 9 115 IPR036390 -
Aip10g00398 362 CDD AdoMet_MTases 201 300 - -
Aip10g00398 362 Gene3D Vaccinia Virus protein VP39 114 362 IPR029063 -
Aip10g00398 362 PANTHER O-METHYLTRANSFERASE 7 362 IPR016461 GO:0008168
Aip10g00398 362 PIRSF O-mtase 1 362 IPR016461 GO:0008168
Aip10g00398 362 Pfam O-methyltransferase domain 139 344 IPR001077 GO:0008171
Aip10g00398 362 PANTHER ASMT2 7 362 - -
Aip10g00398 362 Gene3D - 2 112 IPR036388 -
Aip10g00398 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 361 IPR029063 -
Aip10g00398 362 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Aip10g00398 362 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 362 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00398 Aip-Chr10 3967096 3968593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00398 30 360 Monolignol Biosynthesis Gene Families AT5G54160 33.038 2.66e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00398 K22588 - qsu:112018723 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00398 10 3967096 3968593 Aip10g00398 10 3967096 3968593 ECH