Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00388 ATGGACAGTCATAGTAATGATGCAAATTCTGAAGGGATTCTTGAGAATGTATGGGCCAAAATTATCAGCAATCAAAGAGGAGGAGATCATGTGAGAACATATGGTGATGGTGATGTTGCAGCAGAACAATCATGGGAAGAACTTCCACAACTTGATGGAAGAGACAACAATAACGGTTCAGTGGGAATTCTGCAGAGGCTTCCAAGCTTAGGGAGGTGGATATCAATGGGAGCAGATTTCTGGGAAGATGTTTTAGATGGAGTTGTTAATATTACACCAAATGATGCTGCAACAACAACAAACAATAACGAACAAGATTGTAATAAGAAGGTAGAACTAGAGAAGAGGGTGATGAAAACAGAGAAAAAAGTGGTGACAAAGCACTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATATGCGGCGGAGATTCGAGACTCGTCGAAGAAAGGTGCTAGAGTTTGGCTTGGAACATTTGAGACGGCTGAAGAAGCAGCATTAGCATATGATAAAGCTGCTTTGAGGATTAGAGGGCCAAAGGCATACCTCAATTTCCCATTTGACACAGTTTCAAAAGCTATACAATTTGATCATCATTATTGTAATAAGAGAGGGTCATCTGTGGTGTTGAATGAGCAACCTCCAACAAAGAAGGTAGCAGGAGGGTTTCATCATGATCATGATGAAGAAGTAGATGTTTTTGTGTTTCAGGATTTAGGAAGTGATTACTTGGATAATTTGCTGTCTTCTTTTTAA 756 0.4034 MDSHSNDANSEGILENVWAKIISNQRGGDHVRTYGDGDVAAEQSWEELPQLDGRDNNNGSVGILQRLPSLGRWISMGADFWEDVLDGVVNITPNDAATTTNNNEQDCNKKVELEKRVMKTEKKVVTKHYRGVRRRPWGKYAAEIRDSSKKGARVWLGTFETAEEAALAYDKAALRIRGPKAYLNFPFDTVSKAIQFDHHYCNKRGSSVVLNEQPPTKKVAGGFHHDHDEEVDVFVFQDLGSDYLDNLLSSF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00388 251 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 251 - -
Aip10g00388 251 ProSiteProfiles AP2/ERF domain profile. 128 186 IPR001471 GO:0003700|GO:0006355
Aip10g00388 251 SUPERFAMILY DNA-binding domain 128 187 IPR016177 GO:0003677
Aip10g00388 251 PRINTS Ethylene responsive element binding protein signature 129 140 IPR001471 GO:0003700|GO:0006355
Aip10g00388 251 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Aip10g00388 251 SMART rav1_2 128 192 IPR001471 GO:0003700|GO:0006355
Aip10g00388 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF091 15 251 - -
Aip10g00388 251 CDD AP2 127 186 IPR001471 GO:0003700|GO:0006355
Aip10g00388 251 Pfam AP2 domain 128 178 IPR001471 GO:0003700|GO:0006355
Aip10g00388 251 Gene3D AP2/ERF domain 127 189 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00388 Aip-Chr10 3887612 3888367 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00388 13 202 AP2-EREBP Transcription Factor Family AT4G18450 44.560 2.51e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g00388 AP2 1.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00388 - - lang:109334345 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00388 10 3887612 3888367 Aip10g00388 10 3887612 3888367 ECH