Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00385 ATGCATTGTTGCCCTTCAACTATTCTTCAATCACTTGCAATGACTTGGCTCTTCTTTTTTCTTGTTTTCATCATGAATGCAAACTCACATGAGGTCAAGAATGAAGGCAACAAAGTTATATCAGTTGGGGTGATTATGGATGCTAATTCTCGTGTGGGGAAAGAGCAGAGAGTAGCCATGGAAATTGCAGCACAAACTTACAATAACACTTCAAAGAACTACAAGTTGTCTCTCCATTTTCATAACTCTACCATGGACCCCATAAGTGACACCAATCTTGCGGAAGAAATGATAAGAATGCAGAAAGTGCAAGTGATTTTAGGCTTCCATAGATGGCCAGAAGCAGCTCTTATAGCTGAAATAGGATCGCGGTTTCAAGTTCCTATTATATCCTATGCAGAACCTTCCATTACTCCACCATTGATGTCAATCCGGTGGCCATTTTTGGTAAGAATGGCCAACAGTGGCAGAGCATATGTAAAATGCATTGTGGATATAGTCAAAGCTTATGGCTGGCAAAGAGTAATAGCCATCTATGAAGATGATGCCTATGGTGGAGAACAAGGGATGCTAGCCCTGCTATCTGAGGCCCTCCAAGATGCAAATTCAATGATTGAATACAATTTTATTCTTCCACCAATTTCTTCTTTGCATGATCCAAGAGGGCTAGTGCAAGACGAGCTACTTAAGTTAATGAATACTCAACAATCGCGAGTGTTTATCGTGCTGCAATCATCACTAGAAATGGTGATTCACTTGTTCAGAGAAGCTTCAAATATAGGACTTGTGGATAAAGAATCAGTTTGGATAATCCCAGAGAGCATAACCAATCTAATTGACTCCATCAACAAGTCTTCCATTTCATACATGGAAGGAGCTATAGGAATCAAGAACTACTACTCTGAAGAAAACAACAAGTACCAAGATTTTGAGGCTCAGTTTCAGAGAACTTTCTGGCCAAGAAGCCCCGAAGAAGATAACCGAAAGCCTGGATTTTTTGCTTTGCAAGCATATGATAGCATTAGCATTGTGTCTCAAGCACTGGACAGAATGAGCAATGGCAAAAGCAGCACAAATACCTTACTAAGAGAAATACAGTCAAGCAATTTTTCTGGTTTAAGTGGCCATATTGAATTTGAAGATGGAAAACTGCTGCAGAATCCTATCTTGAGGGTAGTGAATGTGGTTGGGAAGAGTTACAAAGAGTTGTGCTTTTGGACTCAGCAACATGGATTCTCCACAAGCTTCCATGCAACAAGACAAGATGGTGGTAATGGTAACCATGTTTCAGAATGCTTCAATGCTGTACTTTGGCCTGGGAATTTGCAAAGGACACCAAAGGGATGGAAAATGCCTACTAAACAAAAACCTATGCAAATCGCGGTCCCAGGCAGAACTACATTTTCCAGGTTTGTCAAGGTTGATTATGCCAAGAATCAAAACCTTGATAAATATGATGGATTCTGCATCAAGATTTTTGAGCAGGTGCACAAAATTTTGGGGTATGATCTACCCTATGAGTTCCATGCTATCAATTGCACCTATCCTGATTTGGTTCAATTAGTCTATAACAAGAGTTATGATGCTGTTGTTGGGGATATTACCATACTAGAGGAAAGATTGCCATATGTGGACTTCACTGTGCCATATGCAGAATCAGGATTGTCAATGTTAGTTCCAGCAAAGTCTGACGAATCAGCATGGCTGTTCACCAAGCCATTTACCTGGCAACTTTGGACAGTTACAGGAGCCATCTTGATCTATACAATGTTAGTAGTTTGGCTACTTGAGAAAGAACCTAATCCAGAGTTTCATGGCAATTGGAAGAACCAGATCAGCACTGCTCTTTGGTTTACCATCTCCTCTTTGTTCTTTGCTCACAGGGAGAAAGTGTATAGAAAGTTAACTCGGGTGGTGATGGTATCATGGCTATTCCTAGTTCTGATTCTTAATTCAAGCTACACTGCAAGTCTTTCTTCAATGCTCACAGTGAAGCAGCTGCAGCCAAATGTCACAGACATTGAGTGGCTGAAGAAGAACAACATGAAGATTGGTTGTGATGGTGACTCATTTGTTAGAAACTACCTAGAGGATGTGGAGAAGTTCAAGCCAGAAAACATAATCAACATTATCAGTGAAGACAGATATATTGATGCATTTGCAAATGGTAGCATAGTAGCTGCATTTCTTGAATTACCCTATGAAAAAGTATTCATTAGTGAATATTGTGATGGATACACTGCCTCCACTCCCAGAACTAGATTTGGAGGATTAGGCTTTATGTTCCAGAAAGGCTCCCCGGTGACAAGAGATGTTTCCAGAGCTATATTACATCTCTCAGAAAATGGAGAGCTGAAGAAGTTGGAAGAGGAATGGTTGTTGAGTGCATCACAGAAATGCTCCAACATGACCTCCAATGGCACGGAAAGCTTGAGTCTAAGAAGCTTGTGGATTCTATTTGTCATCTCCGGTGCCACTTCCACTATTTGTATGCTACTATCAGCAATGCCATGGCAAAAGTTGTGTCTCCAAAGTCAAGAATTGGCACCAGAACATAATGGCACAACAAGTGATGAGAGTATTTGGAGAAGGGTGATTACACTTGCAATGCAGATTCATAACAAAAAGGTCAACAATTCAAGTGATCATTCTTCTTCTTTTGGAAGGGACAATCATTTGAGAGATAATGATAGCACTGAGCAACAACATCATCATCAACCTGTAAATGGAATCTTGATGCAACATTTTCCACCACCACCAGAAGAAGAAGCAAAAATTTCAGATCTTCCTCATCACTGA 2799 0.4037 MHCCPSTILQSLAMTWLFFFLVFIMNANSHEVKNEGNKVISVGVIMDANSRVGKEQRVAMEIAAQTYNNTSKNYKLSLHFHNSTMDPISDTNLAEEMIRMQKVQVILGFHRWPEAALIAEIGSRFQVPIISYAEPSITPPLMSIRWPFLVRMANSGRAYVKCIVDIVKAYGWQRVIAIYEDDAYGGEQGMLALLSEALQDANSMIEYNFILPPISSLHDPRGLVQDELLKLMNTQQSRVFIVLQSSLEMVIHLFREASNIGLVDKESVWIIPESITNLIDSINKSSISYMEGAIGIKNYYSEENNKYQDFEAQFQRTFWPRSPEEDNRKPGFFALQAYDSISIVSQALDRMSNGKSSTNTLLREIQSSNFSGLSGHIEFEDGKLLQNPILRVVNVVGKSYKELCFWTQQHGFSTSFHATRQDGGNGNHVSECFNAVLWPGNLQRTPKGWKMPTKQKPMQIAVPGRTTFSRFVKVDYAKNQNLDKYDGFCIKIFEQVHKILGYDLPYEFHAINCTYPDLVQLVYNKSYDAVVGDITILEERLPYVDFTVPYAESGLSMLVPAKSDESAWLFTKPFTWQLWTVTGAILIYTMLVVWLLEKEPNPEFHGNWKNQISTALWFTISSLFFAHREKVYRKLTRVVMVSWLFLVLILNSSYTASLSSMLTVKQLQPNVTDIEWLKKNNMKIGCDGDSFVRNYLEDVEKFKPENIINIISEDRYIDAFANGSIVAAFLELPYEKVFISEYCDGYTASTPRTRFGGLGFMFQKGSPVTRDVSRAILHLSENGELKKLEEEWLLSASQKCSNMTSNGTESLSLRSLWILFVISGATSTICMLLSAMPWQKLCLQSQELAPEHNGTTSDESIWRRVITLAMQIHNKKVNNSSDHSSSFGRDNHLRDNDSTEQQHHHQPVNGILMQHFPPPPEEEAKISDLPHH 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00385 932 SMART GluR_14 459 795 IPR001320 GO:0015276|GO:0016020
Aip10g00385 932 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 21 885 - -
Aip10g00385 932 SMART AABind_6 471 796 IPR001638 -
Aip10g00385 932 Gene3D - 158 329 - -
Aip10g00385 932 PANTHER GLUTAMATE RECEPTOR 3.4 21 885 - -
Aip10g00385 932 Pfam Receptor family ligand binding region 58 395 IPR001828 -
Aip10g00385 932 Gene3D - 35 157 - -
Aip10g00385 932 PIRSF IGluLR_plant 8 916 IPR017103 -
Aip10g00385 932 SUPERFAMILY Periplasmic binding protein-like I 37 449 IPR028082 -
Aip10g00385 932 Pfam Bacterial extracellular solute-binding proteins, family 3 483 793 IPR001638 -
Aip10g00385 932 SUPERFAMILY Periplasmic binding protein-like II 433 794 - -
Aip10g00385 932 Gene3D - 459 566 - -
Aip10g00385 932 CDD GluR_Plant 456 793 - -
Aip10g00385 932 Pfam Ligand-gated ion channel 794 825 IPR001320 GO:0015276|GO:0016020
Aip10g00385 932 Gene3D - 721 801 - -
Aip10g00385 932 MobiDBLite consensus disorder prediction 877 932 - -
Aip10g00385 932 Gene3D - 341 458 - -
Aip10g00385 932 Gene3D - 567 701 - -
Aip10g00385 932 CDD PBP1_GABAb_receptor_plant 41 416 IPR044440 -
Aip10g00385 932 MobiDBLite consensus disorder prediction 887 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00385 Aip-Chr10 3846413 3849821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00385 15 833 Ion Channels AT2G29120 32.353 1.82e-143 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00385 - - gmx:100818619 1243.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00385 10 3846413 3849821 Aip10g00385 10 3846413 3849821 ECH