Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00349 ATGTCATCCAAACACATATCCGGAGCGATCATGGCATCTGCCACTCTCGTCGACGCCTGGGGCCGCCGCTACCTTGAGCTCAACCGCGGCAATCTTCGTCAGAAGGATTGGCAGGACGTTGCTGACACCGTCAACGCCCTCCATGGCCACACCAAGAAGACTCACCGAACCGATGTCCAGTGTAAGAACCGAATCGACACCATTAAGAAGAAATACAAGGTCGAGAAGGCTAGGGTTACGGCCTCCAACGGTACCGTTTCGTCCTCCTGGCCCTTCTTCGAGAAATTGGACGCGTTGATTGGCCCTAACTTCAACGCAAAGAAGAATTCCTCTTCGCCGTCCCCGTCTCCTCCAGTGGCTCTCCCGTTGTTGCCGTATCGGAAGGCCTCTGTGCCGGCTGTTTCTCCCGTTACTGCTGTGCCACCAGCCGCCGTGGCGCTGCCGCAGAAGCGGTCGGCGGCGGCAGCGATGGACGATGGGTACTTCAGGAGGAATTATTCGGCGATGGCAGCCGCTGCGGCTGCCGCTGAGGCCGATGAGGAGTATGAGGACGAAGAGGAAGAGGAAGAGGAAGATGAGGAGGAAGAAGAGGAGGATGGGAGGGGGAGCGAGGTGGAGGAAGGGGAGAGGGATAGAGAGGGGATGAGGAGGTTGGCCAAGGCAATAGAGAGGTTTGGGGAAGTGTATGAGAGAGTGGAAGCACAGAAGCTGAAGCAGATGGTGGATTTGGAGAAGCAGAGGATGCAGTTCGCCAAGGATCTCGAGGTGCAGAGGATGCAGATGTTTATGGACACGCAGGTTCAGTTGGAGAGGATTAAGCGCGGGAAGAGATCCGGGTCTAATGATATGTATAGCTAG 858 0.5641 MSSKHISGAIMASATLVDAWGRRYLELNRGNLRQKDWQDVADTVNALHGHTKKTHRTDVQCKNRIDTIKKKYKVEKARVTASNGTVSSSWPFFEKLDALIGPNFNAKKNSSSPSPSPPVALPLLPYRKASVPAVSPVTAVPPAAVALPQKRSAAAAMDDGYFRRNYSAMAAAAAAAEADEEYEDEEEEEEEDEEEEEEDGRGSEVEEGERDREGMRRLAKAIERFGEVYERVEAQKLKQMVDLEKQRMQFAKDLEVQRMQMFMDTQVQLERIKRGKRSGSNDMYS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00349 285 Coils Coil 234 254 - -
Aip10g00349 285 Pfam Myb/SANT-like DNA-binding domain 14 99 IPR044822 -
Aip10g00349 285 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 12 281 IPR044823 -
Aip10g00349 285 Coils Coil 168 199 - -
Aip10g00349 285 Gene3D - 12 74 - -
Aip10g00349 285 PANTHER OS05G0560600 PROTEIN 12 281 - -
Aip10g00349 285 MobiDBLite consensus disorder prediction 177 204 - -
Aip10g00349 285 MobiDBLite consensus disorder prediction 173 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00349 Aip-Chr10 3511955 3517826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00349 12 284 Trihelix Transcription Factor Family AT3G14180 32.174 5.54e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Aip10g00349 Myb_DNA-bind_4 1.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00349 - - gmx:100785349 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00349 10 3511955 3517826 Aip10g00349 10 3511955 3517826 ECH