Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00342 ATGTCTAAAGAATATGCGGGTGAGATTATTATTGAAGAAGATGAGGAAACTTCTTCATTGGGATGTTGTTCCCAGAAATGCTCTTCATTTGATTTGAATGAAGAAGCAAGCAGTGAAGAAGAAGAAGAAGGAGGAGGTAAGAATAAGAAGGAGGAGGATGAGGCAGCATGTGAAGAGGAGATCAATGCGAACGGAAGATCAAACTCAAGAGAAGATGAAAGAAATAGTAACAACAAAAACAATGAGAGAAGAGGTGGAGTTAGGCAATATGTTAGATCCAAGATGCCAAGGCTTCGATGGACTCCTGAGCTTCATCTCTCTTTTGTTCATGCTGTTGAAAGACTTGGCGGTCAAGAGAGAGCAACACCCAAGTTGGTGCTTCAGTTGATGAATGTGAGAGGGCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGTAGCAAGAAACTTGACGAGACCGGCCAAGTATTAGGTCAAACATACAGATCGAGGCAATTGCATGAAGTAGTGGGACGTAGTAGAAATCATCATGAGTTACTCAATCCTCATCAGCATTTCAAGATGGGAAACGGTGGCATTATTCTTGCAACCAATTTCAACCATCATCATCATTTCCAAGGTTCTCTGATGCACCATCACCACCACCCCCACTTCTCCCTTTCATCACGTTCACATGCAATCGCCACCGATTCAGGATGTAATAACACTCTTGGCCAGGGTAATTCTACTAGCAAGAGTTAA 747 0.427 MSKEYAGEIIIEEDEETSSLGCCSQKCSSFDLNEEASSEEEEEGGGKNKKEEDEAACEEEINANGRSNSREDERNSNNKNNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDETGQVLGQTYRSRQLHEVVGRSRNHHELLNPHQHFKMGNGGIILATNFNHHHHFQGSLMHHHHHPHFSLSSRSHAIATDSGCNNTLGQGNSTSKS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00342 248 MobiDBLite consensus disorder prediction 42 89 - -
Aip10g00342 248 Pfam Myb-like DNA-binding domain 98 148 IPR001005 -
Aip10g00342 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 229 IPR044848 GO:0003700
Aip10g00342 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 152 IPR017930 -
Aip10g00342 248 MobiDBLite consensus disorder prediction 1 90 - -
Aip10g00342 248 SUPERFAMILY Homeodomain-like 94 150 IPR009057 -
Aip10g00342 248 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 151 IPR006447 GO:0003677
Aip10g00342 248 Gene3D - 95 152 - -
Aip10g00342 248 MobiDBLite consensus disorder prediction 18 32 - -
Aip10g00342 248 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00342 Aip-Chr10 3441606 3443929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00342 87 157 G2-like Transcription Factor Family AT2G42660 77.465 5.88e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aip10g00342 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00342 - - aip:107619947 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00342 10 3441606 3443929 Aip10g00342 10 3441606 3443929 ECH