Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00333 ATGAAGCCCTTCTTTTACAGATTCTTGATTCTCCTTGCTCTGTTTTCTCTCGTGGAATCTTCTTCATCATGCAGCAGCAACAACAACAACAGAGACCACGAGCTTGTCTTAAAAGCCTTCCAATATGTCTCTGGATTCAAACCTTCATGGTTCCAAACAACACGCCAACCTTCTTCTTCTTCTTCCAACTGTTCGGTACAAGAGTCATCTCCCATTATTAAGAACATAGAGCTTCCTTCAAGAAACTTAAGCGGCAATATCTCATGGAGCTACCTAAAGAACATGTCAAACCTGCAAGTTCTCGATCTCTCCGGAAATTCCCTGCAAGGCCAAGTATCAAACATGTTGTGGGCAACTCCAAACTTATTAGTAGTAAACCTCTCCAGAAACAGGTTCGGAGGAACCATTGCTTTCAACCAACTCACAACCGTTTCATCATCGCTTCAAGTTCTGAACCTCTCACACAACAGGCTCACCAATCAGGTTCACCTCTCTGGTTTCACAAACCTCAAAACCCTCGACCTTTCCCACAACCACCTTGGAACCTTACCTTCGGGCTTCCAGAACCTCAAAAAACTCCAACACCTCGATCTCTCTAACTGCAACATCGAAGGACCAGTGAAACAAGTCTCTTCCCTTCACTCACTCACCTACCTCGACCTCTCTAACAACACGTTGAATGGAACCTTCCCTTCAGATTTCCCTCCATTGAACACCATCAAGTTCCTCAACATCTCACACAACAACTTCATCAAATCCACAGAACTAAGCCCAAACAAGTACAAGAAGTTCGGCCAATCGGCGTTCATAAACGCCGGCGACAACTTCCACTTGAACTTCAACGCATCCAACCTCCATTCAAAGAAGCAACACCACCAACCACCAATGCAACCAACTAATAACAAACACCACAAGCACAAGTCAAAACACAAAACCGTTTTGCTTGTGGCGGCATCGTGTGCCTCAGGGGTAGTTTTGGTATTGTCGTTGAGCGCGTGCATGTTACGGTGTTACTGTAGGAAGAAGGAAGAGGCGAAGAGGAACAAGTGGGCCATATCGAAACCTGTGGCGTTGACGAGCATCAAGATGGAGAAATCAGGACCGTTCGCCTTCGAGACGGAGTCAGGAACGTCATGGGTGGCTGACCTGAAAGAACCGTCGTCGGCCGCCGTGGTGATGTTCGAGAAGCCGTTGATGAGTTTGACTTTCAAGGACTTGATGAGTGCCACGTCACACTTCGGGAAAGACTCACAACTTGCTGAGGGTAGATGTGGGCCCGTGTACCGAGCTGTTCTACCGGGAGATATCCACGTGGCAATCAAGGTTTTGGAAAACGCAAGAGACGTTGATCACGATGACGCTGTCAACATCTTCGTTGACCTCTCCAGGCTGAAGCACCCTAACCTCTTGCCCCTCTCCGGTTACTGCATCGCAGGGAAGGAGAAGCTGGTGTTGTATGAGTTCATGTCAAACGGGGATTTAGGTAGGTGGTTACACGAGCTACCAACGGGTGACACCAACGTGGAAGATTGGAGTGGTGACACGTGGGAGATTCAAAACGGTATCGCGTCACCTGAAAAGATGGCTTGGCCAACACGACACCGTATCGCCGTTGGTATGGCGCGTGGTCTCGCATTCCTCCACCACGCCGGATCCAGGCCCGTCGTTCACGGCCACCTGGTAACATCTAATATTTTACTCTCTGATGACTTCGAACCACGAATCGCTGATTTCGGGTTGAGGAAATTCGGGCAGGAGCAGAACGCGCCGAATTGCAGCACCGAGACTGACGTGTACTGCTTCGGTGTGGTGCTGATGGAGCTTCTGACGGGACGGCACGGCACGGCGGAGACACGGTGA 1860 0.4935 MKPFFYRFLILLALFSLVESSSSCSSNNNNRDHELVLKAFQYVSGFKPSWFQTTRQPSSSSSNCSVQESSPIIKNIELPSRNLSGNISWSYLKNMSNLQVLDLSGNSLQGQVSNMLWATPNLLVVNLSRNRFGGTIAFNQLTTVSSSLQVLNLSHNRLTNQVHLSGFTNLKTLDLSHNHLGTLPSGFQNLKKLQHLDLSNCNIEGPVKQVSSLHSLTYLDLSNNTLNGTFPSDFPPLNTIKFLNISHNNFIKSTELSPNKYKKFGQSAFINAGDNFHLNFNASNLHSKKQHHQPPMQPTNNKHHKHKSKHKTVLLVAASCASGVVLVLSLSACMLRCYCRKKEEAKRNKWAISKPVALTSIKMEKSGPFAFETESGTSWVADLKEPSSAAVVMFEKPLMSLTFKDLMSATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVNIFVDLSRLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGDTNVEDWSGDTWEIQNGIASPEKMAWPTRHRIAVGMARGLAFLHHAGSRPVVHGHLVTSNILLSDDFEPRIADFGLRKFGQEQNAPNCSTETDVYCFGVVLMELLTGRHGTAETR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00333 619 Gene3D Ribonuclease Inhibitor 140 323 IPR032675 -
Aip10g00333 619 SMART LRR_typ_2 95 118 IPR003591 -
Aip10g00333 619 SMART LRR_typ_2 167 189 IPR003591 -
Aip10g00333 619 SMART LRR_typ_2 213 236 IPR003591 -
Aip10g00333 619 Gene3D Ribonuclease Inhibitor 36 139 IPR032675 -
Aip10g00333 619 ProSiteProfiles Leucine-rich repeat profile. 169 191 IPR001611 GO:0005515
Aip10g00333 619 Pfam Leucine Rich Repeat 97 113 IPR001611 GO:0005515
Aip10g00333 619 Gene3D Phosphorylase Kinase; domain 1 373 488 - -
Aip10g00333 619 ProSiteProfiles Leucine-rich repeat profile. 147 168 IPR001611 GO:0005515
Aip10g00333 619 PANTHER KINASE, PUTATIVE-RELATED 4 618 - -
Aip10g00333 619 Pfam Leucine rich repeat 147 203 IPR001611 GO:0005515
Aip10g00333 619 Gene3D Transferase(Phosphotransferase) domain 1 516 618 - -
Aip10g00333 619 PRINTS Leucine-rich repeat signature 170 183 - -
Aip10g00333 619 PRINTS Leucine-rich repeat signature 213 226 - -
Aip10g00333 619 Pfam Protein tyrosine and serine/threonine kinase 416 585 IPR001245 GO:0004672|GO:0006468
Aip10g00333 619 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 618 - -
Aip10g00333 619 SUPERFAMILY L domain-like 69 271 - -
Aip10g00333 619 SUPERFAMILY Protein kinase-like (PK-like) 401 613 IPR011009 -
Aip10g00333 619 ProSiteProfiles Protein kinase domain profile. 413 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00333 Aip-Chr10 3363891 3365888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00333 72 616 Receptor kinase-like Gene Family AT5G07280 30.952 2.25e-62 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Aip10g00333 PK_Tyr_Ser-Thr 3.7e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00333 - - gmx:100778920 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00333 10 3363891 3365888 Aip10g00333 10 3363891 3365888 ECH