Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00322 ATGGCCACTTCCGCCGCCGCCACAACTGCCGCAGCGCCACGCCAGCTGTCACAGAAGGAGCAGGACATCCAGATGATGCTTGCTGCTGAGGTCCACCTCGGAACCAAAAATTGCGACTTCCAGATGGAACGCTACGTCTTCAAACGCCGTAATGATGGTATTTACATAATTAACCTTGGCAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATTGTTGCTATCGAGAACCCGCAGGACATCATTGTTCAGTCTGCTAGGCCATATGGTCAGAGAGCTGTCCTTAAGTTTGCACAATACACTGGTGCGAATGCAATTGCTGGAAGGCACACTCCTGGAACATTCACTAATCAAATGCAAACATCCTATAACGAGCCTCGTCTACTCATTCTGACTGATCCAAGGACTGATCATCAGCCCATTAAGGAAGGTGTTCTTGGAATTGCCTTGTGCGACACGGATTCTACAATGCGCTATTTTGATGTTGGCACTCCTGCCAATAACAAGGGGAAGCACAGTATTGGTTGTCTGTTTTGGTTATTAGCAAGGATGGTTCTGCAGATGAGGGGTACTATTCGGCCGGGGCTTAAGTGGGACGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAGGCCAAGCAACAAGAGGAGGAGGAATTACCAGCTGCCCCAGAATATGCCATTCAAGATTTTGGTGCTGCTGGCATTGCCGGCTTCCCCGCAGCTGATGGGGAATGGGGGGCTGTTACAGCTGAACAATCCTGGACTGAACCAGTTCCTCAGCAACCCATTGCAGCTGCTCCTGCTAACTGGGCCCCAGACGCCGCTGCAGGTGATTGGGAGCCAGTTCCAGCTCCACAGGCATCCGTTCCTGCACCTGGAGGTGTTGCTCCCACTGGCTGGGACTAG 915 0.5126 MATSAAATTAAAPRQLSQKEQDIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGVLGIALCDTDSTMRYFDVGTPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEELPAAPEYAIQDFGAAGIAGFPAADGEWGAVTAEQSWTEPVPQQPIAAAPANWAPDAAAGDWEPVPAPQASVPAPGGVAPTGWD 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00322 304 ProSitePatterns Ribosomal protein S2 signature 1. 23 34 IPR018130 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 TIGRFAM uS2_euk_arch: ribosomal protein uS2 19 210 IPR005707 GO:0003735|GO:0006412|GO:0015935
Aip10g00322 304 SUPERFAMILY Ribosomal protein S2 18 204 IPR023591 -
Aip10g00322 304 Hamap 40S ribosomal protein SA [rps-0]. 10 251 IPR027498 GO:0003735|GO:0006412|GO:0015935
Aip10g00322 304 Pfam Ribosomal protein S2 26 122 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 MobiDBLite consensus disorder prediction 265 304 - -
Aip10g00322 304 PRINTS Ribosomal protein S2 signature 23 41 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 PRINTS Ribosomal protein S2 signature 53 62 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 PRINTS Ribosomal protein S2 signature 102 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 PRINTS Ribosomal protein S2 signature 127 144 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 PANTHER 40S RIBOSOMAL PROTEIN SA 12 296 IPR005707 GO:0003735|GO:0006412|GO:0015935
Aip10g00322 304 CDD RPS2 26 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Aip10g00322 304 Gene3D - 22 223 - -
Aip10g00322 304 PANTHER 40S RIBOSOMAL PROTEIN SA 12 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00322 Aip-Chr10 3289021 3291567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00322 5 296 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 69.257 4.72e-141 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00322 K02998 - gmx:100786575 430.639