Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00303 ATGGGAGCAGCAACAGCAGTGGAAAGAACTCGCAGCAGAAAGAAGGCATCATCGAGAGGACACCACAAATTTGTAGGTGTTCGTCAGAGGCCATCAGGGAGATGGGTGGCTGAGATCAAAGATTCGTTGCAGAAGGTTAGACTCTGGCTCGGAACCTTCGACACGGCTGAAGACGCCGCTAGAGCTTATGACACTGCTGCCAGAGCCTTAAGAGGTGTCAATGCAAGGACAAACTTTGACTTGCCTGCTGCAGAGTCTGGTGGCGCCGCTGCTTCGAAGCGCGGCGCCGGTTCCGGCTTCATTCCTGATTGCACTGAGCCTTTTTCATTTGAGGATTCCAGTGAGGCTGTGGCTGATGGAGATGGCCTTCTTGGTGCACTCAAGGCTAAACTTTTTGATGTAAAGGGCGGAGGAGGGAGGTTTCCTCCGCCGGTTGTTCAATCAAGCATGGTTTCAAGGTCAACTCAGAATCAGAATCAGAATCAGAATCAGAACTGTTCTGTGAAGAATAAAGAGTTGTTTTCTTCATCAGTAGTAATGCTCCCTAATAAGATGAATAATTATAATAATAATAATAATGCCAATTGCAGCAGCACTTGTAGTTTGCCATGTTTGATTAGTACTTCATCAAACACTTGTTCTAAGAGTGGGATCATGATCCCTGCTAATGCTAATCATGATGATCATGAAGGAACTTTTAATAGCTCTCATCATCATCATCAACAATTTTGTCAAACCCCATCACCTATGACAACATGGTCAAATAATGAAGTATCATATGATCAATTACCATGGACTCATCATCAAGAGAATGGTTTTCTTGCATCTTCAAGCACAGCTACTCTTACATGGCCTAATCATCTCTCAGGGGTAAATGAGTCAAATACTGTAGATAATATGGGATATTCTGCAATGTGA 918 0.439 MGAATAVERTRSRKKASSRGHHKFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDTAARALRGVNARTNFDLPAAESGGAAASKRGAGSGFIPDCTEPFSFEDSSEAVADGDGLLGALKAKLFDVKGGGGRFPPPVVQSSMVSRSTQNQNQNQNQNCSVKNKELFSSSVVMLPNKMNNYNNNNNANCSSTCSLPCLISTSSNTCSKSGIMIPANANHDDHEGTFNSSHHHHQQFCQTPSPMTTWSNNEVSYDQLPWTHHQENGFLASSSTATLTWPNHLSGVNESNTVDNMGYSAM 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00303 305 MobiDBLite consensus disorder prediction 1 25 - -
Aip10g00303 305 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Aip10g00303 305 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Aip10g00303 305 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Aip10g00303 305 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Aip10g00303 305 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Aip10g00303 305 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 289 - -
Aip10g00303 305 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Aip10g00303 305 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 6 289 - -
Aip10g00303 305 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Aip10g00303 305 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00303 Aip-Chr10 3135953 3136870 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00303 11 79 AP2-EREBP Transcription Factor Family AT5G19790 68.571 4.87e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip10g00303 AP2 5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00303 - - gmx:102661478 244.202