Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00291 ATGACTAGGGCTGTCCGCAATAGGGTACTCAAGGATGCGAATGGTGATGTCAGTGATCATCTACGCAATCACATACATTTAACAAATTGCATTCACTTGAAGAACCACATGCACAAGAACAGCCCTATCCTGGCTGATAGGTCCCTCATGAGGGACCTTGTTGTGCTTCAGAGGTCACGTTCACTCAGGGACCCTTCGGCCAGCCCTCAATCATGGAACTCACCTTCTGTGGTTGATATGCTTTTCAAAAAGGTTGAAAATGATGTCATGCTCCATGGAGGAAGAAGGTCTGTGGGCGGGGAGCGCAGGAAGGAAGGGAGGAGGTTGTCCGGAACCTCGCCACCCTTGGTGAGCATAGGTACATCAAGAGTTGCTCCAGGTGATGCTAGTAGAGGCAATGATGGGGTGCCAGCAACTAGTGAGCGTAGTAGCAAGAGTGGAATTGGGGATGGGAAGAGAGTTGGGAGAGAAGAATCTGGTAGAAAGAGTGATAGGCCTGATTATGTGGATGTTAGTCAAGAACAGCATCTAAGTCAAGCTGCCAAAACTTTGTCTGAAGATGTTGCTTCAAGGCACTCTGAATCTAAAGGGAGAAAGAAACATAAAGGGAAAAATGTTCGAGATGTTCAAGTTAAGACCCTTTCTGAACAGCTTAATGATATTCCGTTGGATAGTGATGATTTAGCATCATCAAACATCCATTTTCGTGGAAGGTTTCCTAGACAAGAGAAAATCATTGAGGAGGCAGAAGCCAGTGTGCGTGGTCATGGAAGTCGGGTAAAGAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGTGGCTACAGCATCAAGAGATACTGGTGCTGAGAATGAATTGTCTGTGGCCTCCAACTCATTAGCTCATGGTTCAGCCCACCAGAGATATCACTCAGAGGAGGCTGATGAGTTCCTAGATGGAAATGTTACCAGGGCTCCAAAAAATGGTTGTGGTATTCCATGGAATTGGTCCAGGATTCATCATAGAGGTAAAACATTCCTTGACATGGCAGGGAGAAGTTTTACTTGTGGTTTATCTGACTCAAGGTTAAGGAAAGGGTTAAATGGCAATGGAAGAAATATTTCTGAAATGCCTGTGGCATCTGAGCACTCAGGATCATCTACTAAATCTGATGCAGAGGCAATGCCTTTATTACTTGATGCATCTGGGAGCACTGAAAATGCTTGTTGGTCCCATGACTATTCCGGGGAACTTGGTCTTTTTGGTGATAACTTGTTCAACCGTGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGACCAACATAAGTTGAGAGGGAGTCGTCATGGTAGACATCAAAGCTTAACACAAAAGTATATGCCGCGAACCTTCAGAGATATGGTTGGACAGAGTTTAGTGTCACAAGCTCTTTCGAATGCTGTAATGAGGAGAAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACCGGAAAAACTTCCTGTGCCCGCATATTTGCCAGAGCATTGAATTGTAACTCTTCGGAACACCCGAAACCTTGTGGCTTTTGCAATTATTGCATGGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGCCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTTCTTGACCATATGATTGTATCCCAGCTCCCATCACAGTACAGAGTGTTCATTTTTGATGACTGTGATACTTTATCAGTGGATTGTTGGAATGCCATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCCTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTTCCAAAGCTGAAGGATGGAGATATTATATATACATTGCAGTTGATTGCAACCAAGGAAGGTCTAGATATTGATAAGGATGCCTTGAAACTCATCGCATCAAGATCTGATGGATCGTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAACTGGTAGGGCTTATCTCTGATGAGAAATTGATTGATCTACTTGATTTGGCATTATCTGCTGACACAGTCAATACTGTGAAGAATTTGAGGGTGATCATGGAAACTGGTGTTGAGCCATTAGCTTTAATGTCACAGCTCGCCACAGTAATAACTGATATACTTGCTGGGACATATGACTTCACAAAAGAAAGGCGAAGAAGAAAGTTCTTCCGGAGACAGCCGTTGTCTAAAGAAGACATGGAAAAGCTTCGCCAAGCACTAAAAACATTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGATAAGCTTACGTGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAACAATATGTGATGCCTACTTCATCTGATAATAGCTTCAACCATAGTCCCCTAGATCTAAACAATTCTGGTGTGAGAGAAGCAACCAGAATAAATGGAAACCCTGTTGAAATTTCCAGCAAAGCAAGGCAATTATCAGTAGATTCTAGATTAGAAAACTTCCATGCGGGACACTCAGCTAATGGTATGACAAAGGATCCTAGTACAGAGAAAAGAAGACTCAGTGTGTCTGCTTCTGCCACTCAACAAACTTATTCCCATATGGCCAACAAGAGTAGAATGAATGAAAGGCAGATATTGAGTAAAAACCATAAAGGTATTGAAGAGATGTGGTTAGAGGTTCTTGAGAGGATTCAAGTTACTGGACTGAGAGAATTTTTGTATAAAGAAGGCAAGCTGATCTCTGTCAGTTTTGGAGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAAATGACCAAATCCACGGCTGAGAAGTTCACAGGTCACATTTTACAAGCATTTGAATCTGTCCTTGGAACATCTGTAACGATAGAAATTAGATGCGAGTCAACTAGAGATGCAGGCTCAGCTGTTCAACTTCCTCTTACATTGCCTGCTACTGATGATAGTTCGTCACAAATTAGAGAATTAAGTGGTGTCAGTGTCGCTCGAGCTCATCCAAGGGGTGAAATCATAGAAGAAGCAGCTTCTCCAGCAGAGCACAAGAATGATGCACAGCAAGTTGATGCTCATGCAACATCTTACAGAAGTGTAGAAGGTTCAAGTATAGGGCAAGCATCAGCTTCCCAAAGAAATCCAATAGTTAAGTCTCACTTGGACCGCAGAAAGCTTAGGGAACAAGGTCAAAGTAAAAGTATTGTAAAAACTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCGGAAAGCCAGCGAAGTGGGTGGTCGAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACTAGAGAATCTGAAACTGGAACCAAGATCAAGGAGCTTACTTTGCTGGAAAGCATCAAGAGCAACCCGTCAGAAGCTGTCCCGCTTGAAAATTCGAACCCGAAAACCAAGAGCATTGCTGAAGTTAGTCTCATGTGGGAGATGTCTCTCTTCAAAATCTCCAAGATAG 3528 0.4303 MTRAVRNRVLKDANGDVSDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPQSWNSPSVVDMLFKKVENDVMLHGGRRSVGGERRKEGRRLSGTSPPLVSIGTSRVAPGDASRGNDGVPATSERSSKSGIGDGKRVGREESGRKSDRPDYVDVSQEQHLSQAAKTLSEDVASRHSESKGRKKHKGKNVRDVQVKTLSEQLNDIPLDSDDLASSNIHFRGRFPRQEKIIEEAEASVRGHGSRVKRRKFRSARRARVATASRDTGAENELSVASNSLAHGSAHQRYHSEEADEFLDGNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFTCGLSDSRLRKGLNGNGRNISEMPVASEHSGSSTKSDAEAMPLLLDASGSTENACWSHDYSGELGLFGDNLFNRDIDSDLASEARSGDQHKLRGSRHGRHQSLTQKYMPRTFRDMVGQSLVSQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCMAHDMGKSRNIREVGPVSNFDFESIMDLLDHMIVSQLPSQYRVFIFDDCDTLSVDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDGDIIYTLQLIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLIDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVMPTSSDNSFNHSPLDLNNSGVREATRINGNPVEISSKARQLSVDSRLENFHAGHSANGMTKDPSTEKRRLSVSASATQQTYSHMANKSRMNERQILSKNHKGIEEMWLEVLERIQVTGLREFLYKEGKLISVSFGAAPTVQLMFSSQMTKSTAEKFTGHILQAFESVLGTSVTIEIRCESTRDAGSAVQLPLTLPATDDSSSQIRELSGVSVARAHPRGEIIEEAASPAEHKNDAQQVDAHATSYRSVEGSSIGQASASQRNPIVKSHLDRRKLREQGQSKSIVKTKVSLAHVIQQAESQRSGWSKRKAVSIAEKLELENLKLEPRSRSLLCWKASRATRQKLSRLKIRTRKPRALLKLVSCGRCLSSKSPR 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00291 1175 Pfam DNA polymerase III subunits gamma and tau domain III 678 797 IPR022754 GO:0003887
Aip10g00291 1175 Gene3D - 440 619 IPR027417 -
Aip10g00291 1175 PANTHER PROTEIN STICHEL-LIKE 3 189 1142 - -
Aip10g00291 1175 SUPERFAMILY post-AAA+ oligomerization domain-like 693 796 IPR008921 GO:0003677|GO:0006260
Aip10g00291 1175 CDD HLD_clamp_pol_III_gamma_tau 622 685 IPR045085 -
Aip10g00291 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 669 IPR027417 -
Aip10g00291 1175 MobiDBLite consensus disorder prediction 367 382 - -
Aip10g00291 1175 MobiDBLite consensus disorder prediction 146 171 - -
Aip10g00291 1175 Pfam DNA polymerase III, delta subunit 465 622 - -
Aip10g00291 1175 ProSiteProfiles IQ motif profile. 242 271 IPR000048 GO:0005515
Aip10g00291 1175 MobiDBLite consensus disorder prediction 172 186 - -
Aip10g00291 1175 Gene3D - 625 685 - -
Aip10g00291 1175 MobiDBLite consensus disorder prediction 362 382 - -
Aip10g00291 1175 MobiDBLite consensus disorder prediction 92 109 - -
Aip10g00291 1175 CDD AAA 463 622 - -
Aip10g00291 1175 SMART AAA_5 481 622 IPR003593 -
Aip10g00291 1175 Coils Coil 758 785 - -
Aip10g00291 1175 MobiDBLite consensus disorder prediction 1027 1047 - -
Aip10g00291 1175 MobiDBLite consensus disorder prediction 92 208 - -
Aip10g00291 1175 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 189 1142 - -
Aip10g00291 1175 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 448 796 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00291 Aip-Chr10 3015581 3020323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00291 448 746 Core DNA Replication Machinery Family AT1G21690 23.333 4.68e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00291 - - gmx:100809005 1891.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00291 10 3015581 3020323 Aip10g00291 10 3015581 3020323 ECH