Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00286 ATGGATGAAGTTCAGGGAAGTTCAAGTTCCTTACCTCCATTTCTCACAAAGACATATGAGATGGTGGATGATCCTTCCACCAATTCCATTGTTTCATGGAGTGACAGCAGCAGGAGTTTTGTTGTTTGGAATCCACCAGAGTTTGCAAGGGTCTTGTTACCAAAATTCTTTAAGCACAATAACTTCTCAAGCTTTATCAGACAGCTCAACACTTATGGCTTTAAGAAGATTGACCCTGAACAATGGGAATTTTCCAATGATGATTTTGTAAGAGGTCAACCAAATCTTATGAAGAATATTCATAGGCGCAAACCGGTTCATAGCCATTCTTTGCAGACTCTACATGGACAAGTGGCTATTCCGCTAACCGAGTCAGAACGGAAGAGTCTGAAAGATGACATTGAAAAGCTTAAGCATGATAAACAAGAACAGATTCTGGAGTTACAGAGACAAGAACAAGAGTGGGAAATTTTCAAGTTAAAAATAGATTGCACAAAGGAGCGTTTGGAAACAATGGAAAAGAGGCAACAGAATATGATTTCTTCTATTTCTCAAGTGCTGCATAAACCTGGGGCTGCATTAAATCTGTTGACACTGACAGAAAACATGGAAAGAAAACGAAGGTTGCCAAAAGGCAGCAGTCACTTTACTGATGAAGCTAGCATTGAAGATCCTATGGAAATATCCCAAGTGTTACCTAGTGAAAATGCAGAGAGTAGTGGCTTCGTCACATCATGCATAGAACGAATGAATCAGCTCGAGTCAACCCTGGTATTTTGGGAATATATTGCACAAGATGTGAATGAAACCATTGTTCAAAGTCATTCAAACTTGGATGTTGATGAATCCACAAGTTGTCCAGATAGTCCAGCGGTATCTAGTGTGCAACTCGATGATGAAGTTCAGCCTAAGTCATCCGGGATAGACATGAATTCTGAGCCAGCTTTACCTTCTGATACTGTTGCATTGAAGGAACAACCTGTTGGAACTACCCCTGCAGCTACTGGTGTTAACGACAAATTCTGGGAACAATTCTTGACAGAGAATCCTGGTTCAACAGAACTGCAAGAGGCACAATCAGAAAGAATGGATTTGGACAACAAAAAGAATGAAGGAAAGCCTAGTGCACATGGCAAATTTTGGTGGAACATGAGGAATGTAAATAATCTTCCAGAACAGATGGGTCATTCTTAG 1194 0.4037 MDEVQGSSSSLPPFLTKTYEMVDDPSTNSIVSWSDSSRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIDPEQWEFSNDDFVRGQPNLMKNIHRRKPVHSHSLQTLHGQVAIPLTESERKSLKDDIEKLKHDKQEQILELQRQEQEWEIFKLKIDCTKERLETMEKRQQNMISSISQVLHKPGAALNLLTLTENMERKRRLPKGSSHFTDEASIEDPMEISQVLPSENAESSGFVTSCIERMNQLESTLVFWEYIAQDVNETIVQSHSNLDVDESTSCPDSPAVSSVQLDDEVQPKSSGIDMNSEPALPSDTVALKEQPVGTTPAATGVNDKFWEQFLTENPGSTELQEAQSERMDLDNKKNEGKPSAHGKFWWNMRNVNNLPEQMGHS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00286 397 Coils Coil 120 154 - -
Aip10g00286 397 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 384 IPR027725 -
Aip10g00286 397 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip10g00286 397 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip10g00286 397 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip10g00286 397 MobiDBLite consensus disorder prediction 279 313 - -
Aip10g00286 397 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip10g00286 397 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip10g00286 397 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip10g00286 397 MobiDBLite consensus disorder prediction 347 380 - -
Aip10g00286 397 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 384 - -
Aip10g00286 397 MobiDBLite consensus disorder prediction 359 375 - -
Aip10g00286 397 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Aip10g00286 397 Gene3D - 6 104 IPR036388 -
Aip10g00286 397 MobiDBLite consensus disorder prediction 279 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00286 Aip-Chr10 2967050 2969096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00286 7 396 HSF AT4G18880 53.250 5.49e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip10g00286 HSF_DNA-bind 2.4e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00286 K09419 - gmx:100798004 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g00286 10 2967050 2969096 Aip10g00286 10 2967050 2969096 ECH