Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00272 ATGGCAACAAGTTCAAGTTCAAGTTCAAGTTCAAGTTCAAGTTCAAGATCAAGCAACAATGGCAAAGCCATAGGAATTGATCTTGGCACAACCTACAGTTGTGTTGCAGTGTGGCAAAACAACCACGTTGACGTCATTCCAAACGAACAAGGCAACCGCACCACTCCTTCTTGCGTTTCATTCACTCACACTCAAAGATTACTAGGCGATGCCGCCATTAACCAACTCTCCTTGAATCCACTCAACACTGTCTTCGATGCCAAACGCTTGATCGGTCGCAGGTTCAACGACCACTCAGTTCAAGAGGACATGAAGCTGTGGCCTTTTAAGGTTGTCCCTGATCCTAACAACAGCAACAAACCACTCATTCTTGTTAACTATAAGTGTGAAGAGAGATACCTTGCACCTGAAGAGGTGTCTTCCATGGTGCTTTTCAAGATGAAGGAGGTTGCTGAAGCTTACTTAGGCCATTCTGTGAAGAATGCAGTCATCACTGTCCCTGCTTACTTCAACAACTCTCAGAGACAAGCCACCAAAGACGCCGGAAGAATCGCCGGCCTTAACGTTATGAGGATCATAAACGAGCCTACTGCTGCTGCCATTGCTTATGGCTTCGACAAGAAGAGTTGGAGGGAAGGTGAGAAGAATGTGCTTGTGTTTGATCTTGGTGGTGGCACTTTCGATGTTTCATTAGTAACAATTGATGAAGGGATGTTCAAGGTGAAGGCCACTTTGGGAGACACACATTTGGGAGGTGAAGATTTTGATAACAAAATGGTGAACCATTGCGTTGAATTGGTAAAAGGGAGGTACAAGAAGGACATTAGTGGGAATGTGAAAGCATTGAGGAGGTTAAGGTCACATTGTGAGAGGGCCAAGAGGAATCTCTCTTCCATTTCACAAACAAGAATCGAAATCGATGCTTTGCACGAAGGGATTGATCTTTACCTTACTGTTACTAGAGCTGCATTTGAGGAATTGAACAAGGACTTGTTCAAAAAGTGCATGGAGACAGTGGAGAAATGCCTAATTGAGGCTAAGGTTGACAAAAGGCAAGTACACGAGATTGTTCTTGTTGGTGGCTCTACTAGAATTCCGAAAGTTCAGCAACTCTTGAAGGAGATGTTCTGTGTCAATGGTATGGTTAAAGAGCTTTGCAAAAGCATCAATGCCGATGAGGCCGTGGCGTATGGTGCTGCGGTTCAGGCAGCCATATTGAGTGGTGAAAGAGACAAGAACGTGGAGGAGCTCTTATTGCTTGATGTGTTGCCGCTAAGCCTTGGAATTGAAGCTTCCGGTGGAGCCATGTCGGTTTTGATTCCTAAGAACACCATGATTCCGACCAAAAAAGAGAGGGTTTTTTATCCTTCATATGAGGATCAAAGCAGTGTTATGATCAAAGTGTTTGAAGGAGAAGAACAAAAAACAAAGGATAATGTCTTTCTCGGGAAGCTTGAGCTCCAAGCACCAAGAGGAACCTCACAGATCAATGTTTGCTTCGATATAAACATCGATGGCATTCTTGAGGTCACGGCTGAAGACAAAAGTTCGAGGGTGAAGAAAACGATCAAGATCAACCACAGGAATGGAAGGTTGAGGCCAGAAGAGTTGAAGAGAATGGTGAGAGATGCAGAGAAGTTTAAGGAAGATGATGAGGAAGTAAAGAAGAAGGAGAAGGCAAAGAACTCGCTTGAAAACTATGCATATGAAATGAAGCAAAAATTGAAGAATCTAGAGAAGAAAATTGAGGAGGCAATAGAATGGTTAGAGAGGAACCAGTTAGCAGAAGCAGAGGAATTTGAGTTCAGGAAGCAAGAACTGGAAGATGATCTGAAATCAGATTTTGTATCTAATGTTGTTCCAAACCCTGATGAGTCCAAGGTTCCAATATGGTGTACTTGGAGGGTTCCACCAAGTGGTTGGGTTTGTCTCAACACCGATGGTTCAGTGTTGCAGAACAGAAACAATAACAACAAAGCAGCATGTGGGGGTCTAGTTCGAGATTCCTCAGGTAGTTTCCTAGGTGGTTTTTCTGTTAAACTAGATCATGCCACGTCAGTTACAATGGCAGAGTTGTGGGGCGTTGTTCATGGACTCAATCTGGCTTGGGATCTTGGGTGTAGAAAAGTGAAGGTGGATATTGATTCTGGAAATGCTCTTGGATTGGTGAGGAATTGTCCTGTGGCTAGTGATCCTGCATTTGGGTTGGTTTCTGAGATTAATGCACTTGTGAGAAGGGATTGGTTGGTGGAATTCTCTCATATACTTAGAGAATCTAATCGTGCTGCTGACAAAATGGCTCATTTGGGACACACTTTGGATTCGGGTCTTAGTGTGAAGCGGTTCATGGAGGCACCCACTGCTGTTGTTGACATTCTTAATGATGATGTTGCTGGTGTTCCCTTACAACGTGGTGTTCATGCTCGTTAG 2430 0.4387 MATSSSSSSSSSSSSRSSNNGKAIGIDLGTTYSCVAVWQNNHVDVIPNEQGNRTTPSCVSFTHTQRLLGDAAINQLSLNPLNTVFDAKRLIGRRFNDHSVQEDMKLWPFKVVPDPNNSNKPLILVNYKCEERYLAPEEVSSMVLFKMKEVAEAYLGHSVKNAVITVPAYFNNSQRQATKDAGRIAGLNVMRIINEPTAAAIAYGFDKKSWREGEKNVLVFDLGGGTFDVSLVTIDEGMFKVKATLGDTHLGGEDFDNKMVNHCVELVKGRYKKDISGNVKALRRLRSHCERAKRNLSSISQTRIEIDALHEGIDLYLTVTRAAFEELNKDLFKKCMETVEKCLIEAKVDKRQVHEIVLVGGSTRIPKVQQLLKEMFCVNGMVKELCKSINADEAVAYGAAVQAAILSGERDKNVEELLLLDVLPLSLGIEASGGAMSVLIPKNTMIPTKKERVFYPSYEDQSSVMIKVFEGEEQKTKDNVFLGKLELQAPRGTSQINVCFDINIDGILEVTAEDKSSRVKKTIKINHRNGRLRPEELKRMVRDAEKFKEDDEEVKKKEKAKNSLENYAYEMKQKLKNLEKKIEEAIEWLERNQLAEAEEFEFRKQELEDDLKSDFVSNVVPNPDESKVPIWCTWRVPPSGWVCLNTDGSVLQNRNNNNKAACGGLVRDSSGSFLGGFSVKLDHATSVTMAELWGVVHGLNLAWDLGCRKVKVDIDSGNALGLVRNCPVASDPAFGLVSEINALVRRDWLVEFSHILRESNRAADKMAHLGHTLDSGLSVKRFMEAPTAVVDILNDDVAGVPLQRGVHAR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00272 809 PANTHER HEAT SHOCK PROTEIN 70KDA 19 619 IPR013126 GO:0005524|GO:0140662
Aip10g00272 809 SUPERFAMILY Actin-like ATPase domain 212 408 IPR043129 -
Aip10g00272 809 Gene3D Actin; Chain A, domain 4 251 334 - -
Aip10g00272 809 Coils Coil 557 610 - -
Aip10g00272 809 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 413 565 IPR029047 -
Aip10g00272 809 ProSitePatterns Heat shock hsp70 proteins family signature 1. 26 33 IPR018181 -
Aip10g00272 809 Coils Coil 282 302 - -
Aip10g00272 809 PANTHER SHOCK PROTEIN, PUTATIVE-RELATED 19 619 - -
Aip10g00272 809 SUPERFAMILY Actin-like ATPase domain 22 207 IPR043129 -
Aip10g00272 809 Gene3D - 85 142 - -
Aip10g00272 809 Gene3D - 561 613 IPR029048 -
Aip10g00272 809 Gene3D - 208 386 - -
Aip10g00272 809 ProSiteProfiles RNase H type-1 domain profile. 638 772 IPR002156 GO:0003676|GO:0004523
Aip10g00272 809 CDD RNase_H_like 644 768 IPR044730 -
Aip10g00272 809 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 411 560 IPR029047 -
Aip10g00272 809 ProSitePatterns Heat shock hsp70 proteins family signature 3. 356 370 IPR018181 -
Aip10g00272 809 Gene3D - 641 771 IPR036397 GO:0003676
Aip10g00272 809 MobiDBLite consensus disorder prediction 1 20 - -
Aip10g00272 809 Pfam Hsp70 protein 23 609 IPR013126 GO:0005524|GO:0140662
Aip10g00272 809 Pfam Reverse transcriptase-like 645 768 IPR002156 GO:0003676|GO:0004523
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 22 35 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 50 62 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 72 80 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 162 182 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 225 235 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 389 409 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 416 435 - -
Aip10g00272 809 PRINTS 70kDa heat shock protein signature 493 509 - -
Aip10g00272 809 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 560 609 IPR029048 -
Aip10g00272 809 ProSitePatterns Heat shock hsp70 proteins family signature 2. 219 232 IPR018181 -
Aip10g00272 809 Gene3D - 24 404 - -
Aip10g00272 809 SUPERFAMILY Ribonuclease H-like 640 767 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00272 Aip-Chr10 2890839 2893881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00272 22 608 Calmodulin-binding Proteins AT1G16030 65.620 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00272 K03283 - gmx:100795699 1085.48