LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip10g00265	ATGGCTTTTCCAGGAGCAAATGAATCCATGTCAGGAGCAAGTTCACCACAGAGAAAGATGGGAAGGGGTAAGATTGAGATCAAGAGGATTGAGAACACTACAAATCGCCAAGTAACCTTTTGCAAGCGCAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTGCTTTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCCAGCCGTGGTCGCCTTTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGATAGGTATAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCCGAGATTAATGCTCAGTATTACCAGCAAGAAGCAGAAAAACTGCGTGCCCAAATTAGTAACCTGCAGAATAACAACAGGCAAATTCTAGGTGAATCATTAAGCAGTATGAATGTGAGGGATCTCAAAAACCTGGAGGGTAAATTAGAGAAAGGAATCAGCAAGATTCGTTCCAAAAAGAACGAGCTGCTGTTTGCTGAAATTGAATACATGCAAAAGAGGGAGATAGATTTGCACAACAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGGAACAACATGAGTGTGTTGCCAACTACTGGACCCACAAACTATGATTCAATGCATCAATCTCATGAACAACATCAGCATCAGCATCAGCATCAGCAGCAGCAATTTGATTCTCGTGGCTACTTTCAAGTCACTGGCTTACAACCCAATAGTCAGTATGCACGCCAAGACCAAATGTCACTTCAATTAGTCTAA	777	0.4144	MAFPGANESMSGASSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKACSDSSGAGSASEINAQYYQQEAEKLRAQISNLQNNNRQILGESLSSMNVRDLKNLEGKLEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNNMSVLPTTGPTNYDSMHQSHEQHQHQHQHQQQQFDSRGYFQVTGLQPNSQYARQDQMSLQLV	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip10g00265	258	Gene3D	-	32	98	IPR036879	GO:0003677\|GO:0046983
	Aip10g00265	258	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	29	76	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	CDD	MADS_MEF2_like	21	90	IPR033896	GO:0000977\|GO:0045944
	Aip10g00265	258	ProSiteProfiles	MADS-box domain profile.	20	80	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	Coils	Coil	106	133	-	-
	Aip10g00265	258	PANTHER	AGAMOUSB	14	252	-	-
	Aip10g00265	258	Coils	Coil	143	163	-	-
	Aip10g00265	258	SMART	madsneu2	20	79	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	PRINTS	MADS domain signature	22	42	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	PRINTS	MADS domain signature	42	57	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	PRINTS	MADS domain signature	57	78	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	PANTHER	MADS BOX PROTEIN	14	252	-	-
	Aip10g00265	258	Pfam	K-box region	105	190	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aip10g00265	258	ProSitePatterns	MADS-box domain signature.	22	76	IPR002100	GO:0003677\|GO:0046983
	Aip10g00265	258	SUPERFAMILY	SRF-like	21	92	IPR036879	GO:0003677\|GO:0046983
	Aip10g00265	258	MobiDBLite	consensus disorder prediction	1	26	-	-
	Aip10g00265	258	MobiDBLite	consensus disorder prediction	204	230	-	-
	Aip10g00265	258	ProSiteProfiles	K-box domain profile.	106	196	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip10g00265	Aip-Chr10	2808234	2815545	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip10g00265	1	258	MADS-box Gene Family	AT3G58780	62.921	1.38e-109	315

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aip10g00265		K-box	3.6e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip10g00265	K09264		-	gmx:732595	391.349

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip10g00265	10	2808234	2815545	Aip10g00265	10	2808234	2815545	ECH