Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00248 ATGATCGGCTTGGCCGTGCATCGTAACCTTTTGCGTCTCTATGGATTTTGTATGACTCCAGATGAAAGGTTACTTGTTTATCCCTACATGCCTAATGGCAGTGTTGCTGATCGCTTGAGAGACACATGCCGAGAAAAGCCATCTCTGGACTGGAACAGGCGAATGCGAGTTGCTGTTGGCGCTGCACGCGGGCTTCTGTATTTACACGAGCAGTGCAACCCTAAAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGCTAGACGAAAGTTTTGAAGCTGTGGTGGGGGATTTTGGCCTTGCTAAGCTGTTGGATCAAAGGGATTCGCATGTCACCACCGCCGTGCGCGGTACAGTAGGCCACATTGCCCCGGAGTATCTCTCCACTGGACAGTCTTCTGAGAAAACAGATGTTTTTGGATTTGGCATATTACTTCTGGAGCTCATAACAGGACAAAAGGCACTAGATGCTGGGAATGGTCAAGTACAAAAGGGAATGATTCTTGATTGGGTTAAGACATTATTTGAGGAGAAGCGGCTAGAAGTGTTAGTTGATAGGGATCTAAGGGGATGCTTTGATCCAGTTGACCTAGAAATGGCAGTGGAGCTGTCTTTACAGTGCACTCAGTCACTTCCGAGTCTGCGGCCGAAGATGTCGGAAGTCTTGAAGATTCTAGAAGGCCTGGTTGGGCATTCGGCGCAGCCGGAGGAGCCGCAAGGAGGGTCTAACTTATATGAAGAAAGAGCATGCAGTTTCTCCCAAAATTATAGTGATGTTCATGAAGAACCTTCCTTTGTTATTGAAGCCATTGAGCTTTCTGGTCCTCGGTGA 834 0.4748 MIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRDTCREKPSLDWNRRMRVAVGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRLEVLVDRDLRGCFDPVDLEMAVELSLQCTQSLPSLRPKMSEVLKILEGLVGHSAQPEEPQGGSNLYEERACSFSQNYSDVHEEPSFVIEAIELSGPR 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00248 277 ProSiteProfiles Protein kinase domain profile. 1 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00248 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Aip10g00248 277 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Aip10g00248 277 Pfam Protein kinase domain 7 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00248 277 Gene3D Transferase(Phosphotransferase) domain 1 31 234 - -
Aip10g00248 277 PIRSF ILK 2 239 - -
Aip10g00248 277 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 277 - -
Aip10g00248 277 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 277 - -
Aip10g00248 277 SMART serkin_6 4 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00248 277 SUPERFAMILY Protein kinase-like (PK-like) 6 249 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00248 Aip-Chr10 2533396 2534667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00248 1 277 Receptor kinase-like Gene Family AT5G45780 77.256 5.89e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Aip10g00248 Pkinase 1.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00248 - - ahf:112783526 551.977