Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00246 ATGATAACACCAAGAAGGCGGGCTTTACTCACTAGTGCCCCCCCAGTCCCCAACCTTCGTTCTCACCGTCCAAGAAGCCGTACGCTCACCATCGTTCTCACCCTCAAGCAGCCGACTCGCTTTCGCCCTTCCCTCAACTCCCCTTTTCTAGCAAAACAGTTCTGGAACTGCCCTCCTGAGTTAGAACTTGCCACTGGTGGATTCTCTGAGGCCAACTTCCTGGCTGAGGGGGGATTTGGATCCGTTCACAGAGGGGTTCTACCGGATGGACAAGTCGTTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGACCTTGAGTTTTGCTCAGAGGTAGAAGTCCTGAGTTGTGCTCAGCACCGAAATGTTGTTATGCTGATTGGATTCTGTATAGAGGATAAGAGAAGGCTACTAGTTTACGAGTACATATGCAATGGATCATTGGATTCACATTTATATGGGAGACAGCGAGAACCATTAGAATGGGTTGCACGGCAAAAAATTGCCATTGGAGCTGCTCGTGGGTTACAATATCTTCATGAAGAGTGCAGAGTGGAATGCATTATCCACCGTGACATGCGGCCTAACAACATTCTCATAACTCATGATTTTGAACCACTGGTTGGTGATTTTGGATTGGCGAGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATAACTGAAAAAGCTGATGTTTATTCATTTGGGGTGGTATTGGTGGAGCTTGTTACAGGGAGAAAAGCTGTGGATCTCATGCGGCCTAAGGGACAGCAGTGTCTTACTGAGTGGGCACCACCTCTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGGGAACCAATACTTAGAAAATGAGGTCTATTGCATGTTGCATGCTGCATCATTATGCATACGGCGAGATCCTCATTCTAGACCACGCATGTCACAGGTTCTTCGTATACTGGACGGCGACATGGTCATGGACACAAGTTACATTTCAACTCCAAGTTATGATGTGGGAAACCGGAGTGGCCGAATCTGGTCGGAGCCGCTGCAGAGGCAGCACCATTACAGCGGTCCTCTGTTAGAGGAGTCACTTGAATCATTCAGTGGGAAGATATCTCTTGACAAATACAAGCCTGCATATTGGGATAGGGACAACAAAGCAAGAAGGACTTCATGTGAAGATGACATTTAG 1194 0.474 MITPRRRALLTSAPPVPNLRSHRPRSRTLTIVLTLKQPTRFRPSLNSPFLAKQFWNCPPELELATGGFSEANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWVARQKIAIGAARGLQYLHEECRVECIIHRDMRPNNILITHDFEPLVGDFGLARYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLMRPKGQQCLTEWAPPLLEEYAIEELIDPRLGNQYLENEVYCMLHAASLCIRRDPHSRPRMSQVLRILDGDMVMDTSYISTPSYDVGNRSGRIWSEPLQRQHHYSGPLLEESLESFSGKISLDKYKPAYWDRDNKARRTSCEDDI 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00246 397 CDD STKc_IRAK 74 322 - -
Aip10g00246 397 ProSitePatterns Tyrosine protein kinases specific active-site signature. 189 201 IPR008266 GO:0004672|GO:0006468
Aip10g00246 397 ProSiteProfiles Protein kinase domain profile. 68 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip10g00246 397 SUPERFAMILY Protein kinase-like (PK-like) 55 333 IPR011009 -
Aip10g00246 397 Gene3D Phosphorylase Kinase; domain 1 48 143 - -
Aip10g00246 397 Pfam Protein tyrosine and serine/threonine kinase 73 319 IPR001245 GO:0004672|GO:0006468
Aip10g00246 397 MobiDBLite consensus disorder prediction 1 21 - -
Aip10g00246 397 PANTHER INACTIVE PROTEIN KINASE SELMODRAFT_444075 59 388 - -
Aip10g00246 397 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 59 388 - -
Aip10g00246 397 Gene3D Transferase(Phosphotransferase) domain 1 144 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00246 Aip-Chr10 2521677 2524331 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00246 60 339 Trihelix Transcription Factor Family AT1G70460 49.675 1.03e-92 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Aip10g00246 PK_Tyr_Ser-Thr 6.6e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00246 - - ahf:112783851 659.448