Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00132 ATGGGTTATTACAAAAGGGTCAATGGAGTCAACAAAAACAATAAGTTATACCCAACATCCAAGAAGACCTACAAACTTCAAAAGAAGTCTAACATAGTAAAGGGCCAATGGACAGAAAGCGAAGATAGCTTATTGATTCAGCTGGTAGAACAATATGGATTAAGGAAATGGTCTCATATTGCTCAAATGCTGCCTGGGAGAATTGGAAAACAATGTAGAGAGCGTTGGCATAATCATCTAAGACCTGACATTAAGAAAGATATATGGACGGAAGATGAGGATAAGATCCTAATTGAAGCTCATGTGGAGATAGGAAACAAGTGGGCAGAAATTGCGAAAAGATTGCCCGGACGAACTGAAAACTCGATCAAGAACCATTGGAATGCTACCAAGAGAAGGCAATATTCAAAAAGGAAGTGTAGATCCAAGTACCCTAAAACATCTCTCCTTCAAGAATACATCAAGAGTTTAAATTTGGACAAAAATCCTCTAATGGACTATAGGAGAAAATCTGTTAACCCTAGAGGCAATGCTAACAAAACTAGCTCGGCCGCCTCAAGCAAAGCACCACCACCACTTTCGGCGGCGCAACCTCAGCCGGTAGGTAATAATAGTCAATTCTCTATGTCGGATCGGTTGGTGCCAAGTTATGATTTCAATGAGGTAATGCCGGATTTTTGTTTTGATGAGAATTTGTTTGAAGGAGGGTGTAGCATTGATTCATTGCTTGATGACATTCCTTGTGCTCCTATTATGGATACTAGTACTATTAATGTTGTGGATGTTGATTACAAGTGTGATGATATGCAACAAGAGATTGTGGAATCCATGATGGAGGGTGATGGAATAATCAAGAAGGAGATGGATTTGGTGGAGATGGTGACAAAGGTCAATAAAAATTGA 903 0.3953 MGYYKRVNGVNKNNKLYPTSKKTYKLQKKSNIVKGQWTESEDSLLIQLVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWTEDEDKILIEAHVEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPKTSLLQEYIKSLNLDKNPLMDYRRKSVNPRGNANKTSSAASSKAPPPLSAAQPQPVGNNSQFSMSDRLVPSYDFNEVMPDFCFDENLFEGGCSIDSLLDDIPCAPIMDTSTINVVDVDYKCDDMQQEIVESMMEGDGIIKKEMDLVEMVTKVNKN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00132 300 CDD SANT 37 80 IPR001005 -
Aip10g00132 300 Gene3D - 33 86 - -
Aip10g00132 300 Pfam Myb-like DNA-binding domain 34 80 IPR001005 -
Aip10g00132 300 Pfam Myb-like DNA-binding domain 89 128 IPR001005 -
Aip10g00132 300 Gene3D - 87 155 - -
Aip10g00132 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Aip10g00132 300 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Aip10g00132 300 SMART sant 85 133 IPR001005 -
Aip10g00132 300 SMART sant 33 82 IPR001005 -
Aip10g00132 300 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Aip10g00132 300 MobiDBLite consensus disorder prediction 165 207 - -
Aip10g00132 300 MobiDBLite consensus disorder prediction 174 207 - -
Aip10g00132 300 CDD SANT 89 131 IPR001005 -
Aip10g00132 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Aip10g00132 300 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Aip10g00132 300 PANTHER BNAC03G62830D PROTEIN 20 243 - -
Aip10g00132 300 PANTHER MYB PROTEIN-RELATED 20 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00132 Aip-Chr10 1182650 1183992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00132 24 247 MYB Transcription Factor Family AT4G18770 63.393 2.24e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip10g00132 Myb_DNA-binding 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00132 K09422 - gmx:102662267 376.711