Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g00127 ATGATGAATCCAACAATGGAAGAAGAAGATTATAATGAAGGACAACACATCAACAAGAAGAACAAGCATGTGTGCAAGTTCTGCAGCAGGAGCTTCCCTTGTGGTAGATCCTTGGGTGGTCACATGAGGTCTCATGTCATCAATGGTGACATAGATCATCATCACCATGACAATAACAAGCTTCTTGCATCATCATCATCAACAGCAAAAATTAAGAAGATGCTTTCATCTTCTTCATCTACAGAAAACAACACAGGAATAGGTTCTGAAGGCTATGGTCTGAGAGAGAATCCCAAGAAGACATGGAGGCTAACCAATTCAACAAGTGAAGACAATTCTCTGTTGTTCTGCAAGGATTGTGGTAAAGGTTTTCAGTCTTGGAGAGCACTATTTGGCCACATGAAGTGCCATTCTTCTGAGAAAGTAGAGAGCATGGAGTGTGATCAAGATTCATCATGGACTAACAATAGTGCTAGCCATTCTGATAATGAAGAAGCCAATGCTCCAAGCAGAAGGAGAAGATCCAAGAGAACAAGAACAAGGTACATAGCACCATTATCAGCACCAGCAGCAACAACAACTGATTCTTCTGTTTCTGAGGCTGATGAGCATGAACAAGAAGAAGTTGCTATGAGCTTGATGATGTTAAGCAGGGATTTGAGTCCATGGTGTGGTGTCAATTCTGTTTCTGAGTTCTCTAAGAACAAGAACAAGAAGCTTGTCAACATTGGTTCTGAGTTTTCAAAATTAGGCAGTTATTTGAGTTCTCCAAATCTAAGCTCCAAAGGGAAGAAAAGTTCAGAATTTTTGGCTACTGAGAGTGCCAAAGGAGTTAAGGTGATGAACAACACCACAGTTTCAGTTAATGGTTTCAGCAAGATTATTGGGAAGGATAAGAAAAAGTATGAACTTGATTCTGAGTCTGCATTTGAAGAAGGTACTACTAACAATAAGTACAGTTCAATTAAGGCAAAGTTTTGGGATTCTGGATCAAACAAAAAGCCTAATTCATCAGAAGGTGAATTCAGCATCAAGAGCAGTTCTTCTCATAATCATAAGAGAGGAAAGTTTGAGTGTACAACCTGCAACAAGATCTTCCATTCATACCAAGCTCTTGGGGGTCACAGAGCAAGTCACAAGAAGATCAAAGGTTGCTCTTTTGCTTCAAGGAATAATAATGATCAGAGCAGTGAAAACAGCATTGAGTTTGAAGCTGAAGCTGAAGCAGAACATGAAGAAGCACCACCACCATCATCACCCACCCCCACTGATGCATCACAACAAGTACATGAATTTGGTAATAATAGTAATGGTTTTGACAGAGAATCCAAGAAGGGAAACAAGAACAAGGGGCATGAATGTCCAATTTGCTTTAAGGTATTTTCATCTGGTCAAGCCTTGGGTGGACACAAGAGGTCCCATATGGCTTCTGCTTCTGATACTGGGAACTTTCATCAAACAGTTGTACTTCAAGAATCTTCAGTGCCTGAGATTAGGGACTTGCTTGATCTCAATCTTCCTGTTGCTGAAGCTGCTGCTACTGAGGAAGATGATGAAGAAGAAATCAATCCTCATGCTTCTGATTCTTACACTACTTGGTGGGAAAATCACAAGCAGGAAGCATTGGTAGGTCTCATGTCTAACTAG 1647 0.405 MMNPTMEEEDYNEGQHINKKNKHVCKFCSRSFPCGRSLGGHMRSHVINGDIDHHHHDNNKLLASSSSTAKIKKMLSSSSSTENNTGIGSEGYGLRENPKKTWRLTNSTSEDNSLLFCKDCGKGFQSWRALFGHMKCHSSEKVESMECDQDSSWTNNSASHSDNEEANAPSRRRRSKRTRTRYIAPLSAPAATTTDSSVSEADEHEQEEVAMSLMMLSRDLSPWCGVNSVSEFSKNKNKKLVNIGSEFSKLGSYLSSPNLSSKGKKSSEFLATESAKGVKVMNNTTVSVNGFSKIIGKDKKKYELDSESAFEEGTTNNKYSSIKAKFWDSGSNKKPNSSEGEFSIKSSSSHNHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCSFASRNNNDQSSENSIEFEAEAEAEHEEAPPPSSPTPTDASQQVHEFGNNSNGFDRESKKGNKNKGHECPICFKVFSSGQALGGHKRSHMASASDTGNFHQTVVLQESSVPEIRDLLDLNLPVAEAAATEEDDEEEINPHASDSYTTWWENHKQEALVGLMSN 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g00127 548 MobiDBLite consensus disorder prediction 147 204 - -
Aip10g00127 548 ProSitePatterns Zinc finger C2H2 type domain signature. 454 474 IPR013087 -
Aip10g00127 548 ProSitePatterns Zinc finger C2H2 type domain signature. 359 379 IPR013087 -
Aip10g00127 548 SUPERFAMILY beta-beta-alpha zinc fingers 20 46 IPR036236 -
Aip10g00127 548 MobiDBLite consensus disorder prediction 329 345 - -
Aip10g00127 548 MobiDBLite consensus disorder prediction 148 164 - -
Aip10g00127 548 MobiDBLite consensus disorder prediction 329 354 - -
Aip10g00127 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 452 479 IPR013087 -
Aip10g00127 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Aip10g00127 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Aip10g00127 548 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 20 548 - -
Aip10g00127 548 MobiDBLite consensus disorder prediction 389 449 - -
Aip10g00127 548 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 20 548 - -
Aip10g00127 548 SMART c2h2final6 23 45 IPR013087 -
Aip10g00127 548 SMART c2h2final6 357 379 IPR013087 -
Aip10g00127 548 SMART c2h2final6 452 474 IPR013087 -
Aip10g00127 548 SMART c2h2final6 115 137 IPR013087 -
Aip10g00127 548 Pfam C2H2-type zinc finger 452 476 - -
Aip10g00127 548 Pfam C2H2-type zinc finger 117 139 - -
Aip10g00127 548 Pfam C2H2-type zinc finger 23 45 - -
Aip10g00127 548 Pfam C2H2-type zinc finger 357 381 - -
Aip10g00127 548 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Aip10g00127 548 MobiDBLite consensus disorder prediction 75 90 - -
Aip10g00127 548 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Aip10g00127 548 SUPERFAMILY beta-beta-alpha zinc fingers 357 474 IPR036236 -
Aip10g00127 548 MobiDBLite consensus disorder prediction 75 97 - -
Aip10g00127 548 SUPERFAMILY beta-beta-alpha zinc fingers 114 142 IPR036236 -
Aip10g00127 548 Gene3D Classic Zinc Finger 354 474 - -
Aip10g00127 548 ProSiteProfiles Zinc finger C2H2 type domain profile. 357 384 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g00127 Aip-Chr10 1153166 1155486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g00127 354 518 C2H2 Transcription Factor Family AT2G45120 36.747 2.64e-22 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip10g00127 zf-C2H2_6 4.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g00127 - - ahf:112708192 1014.99